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基于ceRNA网络探索结直肠癌的预后标志物。

Explore prognostic marker of colorectal cancer based on ceRNA network.

作者信息

Ke Mu-Jing, Ji Lian-Dong, Li Yi-Xiong

机构信息

Department of Ultrasound, Xiangya Hospital, Central South University, Changsha, Hunan, PR China.

Department of General Surgery, Xiangya Hospital, Central South University, Changsha, Hunan, PR China.

出版信息

J Cell Biochem. 2019 Dec;120(12):19358-19370. doi: 10.1002/jcb.28860. Epub 2019 Sep 6.

Abstract

Colorectal cancer (CRC) is one of the most common malignant tumors in the world. With the deepening of people's understanding of CRC at the molecular level, the survival and prognosis of CRC have been significantly improved with the help of surgery, radiotherapy, and chemotherapy, molecular targeted biological therapy and early detection of diseases. The research of different disciplines and the development of multihistological analysis in recent years have proved that the occurrence and development of CRC is a complex biological process with the common action of multiple factors, which involves the huge changes of various histological levels such as the genome, transcriptome, and epigenome. At present, the abnormal expression of protein products in the transcription process has attracted more and more attention. Based on the sensitivity and timeliness of its changes, it has become a hot topic to study the occurrence and development mechanism of CRC through transcriptome changes, so as to provide markers for early diagnosis and prognosis. In recent years, competitive endogenous RNA (ceRNA) has become one of the hot topics in cancer research. The ceRNA hypothesis holds that transcripts such as long noncoding RNA can competitively bind microRNA (miRNA), thus preventing miRNA from binding to messenger RNA (mRNA) and thereby regulating the expression of mRNA. At present, the interaction mechanism of ceRNA in CRC is still unclear, and exploring its interaction relationship is of great significance to elucidate the occurrence and development mechanism of CRC. In this study, we used The Cancer Genome Atlas (TCGA) RNA - seq data of colorectal Cancer and microRnas - seq data to construct colorectal Cancer ceRNA topology network to mine key RNAs that influence the prognosis of colorectal cancer, providing potential RNA biomarkers.

摘要

结直肠癌(CRC)是世界上最常见的恶性肿瘤之一。随着人们对CRC分子水平认识的不断深入,借助手术、放疗、化疗、分子靶向生物治疗以及疾病的早期检测,CRC患者的生存和预后得到了显著改善。近年来不同学科的研究以及多组织学分析的发展证明,CRC的发生发展是一个多因素共同作用的复杂生物学过程,涉及基因组、转录组和表观基因组等多个组织学水平的巨大变化。目前,转录过程中蛋白质产物的异常表达越来越受到关注。基于其变化的敏感性和及时性,通过转录组变化研究CRC的发生发展机制,从而为早期诊断和预后提供标志物,已成为一个热门话题。近年来,竞争性内源RNA(ceRNA)已成为癌症研究的热点话题之一。ceRNA假说认为,长链非编码RNA等转录本可以竞争性结合微小RNA(miRNA),从而阻止miRNA与信使RNA(mRNA)结合,进而调控mRNA的表达。目前,ceRNA在CRC中的相互作用机制仍不清楚,探索其相互作用关系对于阐明CRC的发生发展机制具有重要意义。在本研究中,我们使用了来自癌症基因组图谱(TCGA)的结直肠癌RNA测序数据和微小RNA测序数据构建结直肠癌ceRNA拓扑网络,挖掘影响结直肠癌预后的关键RNA,提供潜在的RNA生物标志物。

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