Lei Tianxiang, Zhang Yongxin, Wang Xiaofeng, Liu Wenwei, Feng Wei, Song Wu
Department of Gastrointestinal Surgery, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, China.
Laboratory of General Surgery, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, China.
Front Genet. 2022 Jul 15;13:863747. doi: 10.3389/fgene.2022.863747. eCollection 2022.
Colorectal cancer (CRC) is a leading cause of cancer-related deaths worldwide. Exosomes have great potential as liquid biopsy specimens due to their presence and stability in body fluids. However, the function and diagnostic values of exosomal genes in CRC are poorly understood. In the present study, exosomal data of CRC and healthy samples from the exoRBase 2.0 and Gene Expression Omnibus (GEO) databases were used, and 38 common exosomal genes were identified. Through the least absolute shrinkage and selection operator (Lasso) analysis, support vector machine recursive feature elimination (SVM-RFE) analysis, and logistic regression analysis, a diagnostic model of the training set was constructed based on 6 exosomal genes. The diagnostic model was internally validated in the test and exoRBase 2.0 database and externally validated in the GEO database. In addition, the co-expression analysis was used to cluster co-expression modules, and the enrichment analysis was performed on module genes. Then a protein-protein interaction and competing endogenous RNA network were constructed and 10 hub genes were identified using module genes. In conclusion, the results provided a comprehensive understanding of the functions of exosomal genes in CRC as well as a diagnostic model related to exosomal genes.
结直肠癌(CRC)是全球癌症相关死亡的主要原因。外泌体因其在体液中的存在和稳定性而具有作为液体活检标本的巨大潜力。然而,CRC中外泌体基因的功能和诊断价值尚不清楚。在本研究中,使用了来自exoRBase 2.0和基因表达综合数据库(GEO)的CRC和健康样本的外泌体数据,并鉴定出38个常见的外泌体基因。通过最小绝对收缩和选择算子(Lasso)分析、支持向量机递归特征消除(SVM-RFE)分析和逻辑回归分析,基于6个外泌体基因构建了训练集的诊断模型。该诊断模型在测试集和exoRBase 2.0数据库中进行了内部验证,并在GEO数据库中进行了外部验证。此外,使用共表达分析对共表达模块进行聚类,并对模块基因进行富集分析。然后构建了蛋白质-蛋白质相互作用和竞争性内源性RNA网络,并使用模块基因鉴定出10个枢纽基因。总之,研究结果提供了对CRC中外泌体基因功能的全面理解以及与外泌体基因相关的诊断模型。