HIV Proviral Sequence Database: A New Public Database for Near Full-Length HIV Proviral Sequences and Their Meta-Analyses.
作者信息
Shao Wei, Shan Jigui, Hu Wei-Shau, Halvas Elias Konstantine, Mellors John W, Coffin John M, Kearney Mary F
机构信息
Advanced Biomedical Computing Science, Frederick National Laboratory for Cancer Research (FNLCR), Frederick, Maryland.
HIV Dynamics and Replication Program, National Cancer Institute, Frederick, Maryland.
出版信息
AIDS Res Hum Retroviruses. 2020 Jan;36(1):1-3. doi: 10.1089/AID.2019.0214. Epub 2019 Oct 29.
Abstract
摘要
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本文引用的文献
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Cell Rep. 2017 Oct 17;21(3):813-822. doi: 10.1016/j.celrep.2017.09.081.
2
Defective proviruses rapidly accumulate during acute HIV-1 infection.在急性HIV-1感染期间，缺陷型前病毒会迅速积累。
Nat Med. 2016 Sep;22(9):1043-9. doi: 10.1038/nm.4156. Epub 2016 Aug 8.
3
Life of psi: how full-length HIV-1 RNAs become packaged genomes in the viral particles.psi 生活：全长 HIV-1 RNA 如何成为病毒颗粒中的包装基因组。
Virology. 2014 Apr;454-455:362-70. doi: 10.1016/j.virol.2014.01.019. Epub 2014 Feb 14.
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Cell. 2013 Oct 24;155(3):540-51. doi: 10.1016/j.cell.2013.09.020.
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Presence of an inducible HIV-1 latent reservoir during highly active antiretroviral therapy.在高效抗逆转录病毒治疗期间存在可诱导的HIV-1潜伏库。
Proc Natl Acad Sci U S A. 1997 Nov 25;94(24):13193-7. doi: 10.1073/pnas.94.24.13193.
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