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CRISPR 时代的结核病药物发现。

Tuberculosis drug discovery in the CRISPR era.

机构信息

Laboratory of Host-Pathogen Biology, The Rockefeller University, New York, New York, United States of America.

出版信息

PLoS Pathog. 2019 Sep 19;15(9):e1007975. doi: 10.1371/journal.ppat.1007975. eCollection 2019 Sep.

DOI:10.1371/journal.ppat.1007975
PMID:31536613
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6752753/
Abstract

Stewart Cole and colleagues determined the complete genome sequence of Mycobacterium tuberculosis (Mtb), the etiological agent of tuberculosis (TB), in 1998 [1]. This was a landmark achievement that heralded a new age in TB drug discovery. With the genome sequence in hand, drug discoverers suddenly had thousands of new potential targets to explore. But the excitement has since faded [2]. It is unquestioned that genomics has transformed our understanding of the biology of this pathogen. However, the expectation that the Mtb genome sequence would rapidly lead to new therapeutic interventions remains unfulfilled [3]. One of the (many) reasons for this unrealized potential is that our tools to systematically interrogate the Mtb genome and its drug targets-so-called functional genomics-have been limited. In this Pearl, I argue that the recent development of robust CRISPR-based genetics in Mtb [4] overcomes many prior limitations and holds the potential to close the gap between genomics and TB drug discovery.

摘要

1998 年,Stewart Cole 及其同事确定了结核分枝杆菌(Mtb)——结核病(TB)病原体的全基因组序列[1]。这是一项具有里程碑意义的成就,标志着 TB 药物发现的新时代的到来。随着基因组序列的出现,药物发现者突然有了数千个新的潜在靶点可供探索。但这种兴奋感后来逐渐消退了[2]。毫无疑问,基因组学已经改变了我们对这种病原体生物学的理解。然而,Mt b 基因组序列将迅速带来新的治疗干预的预期尚未实现[3]。造成这种未实现的潜力的原因之一(其中许多原因)是,我们用于系统研究 Mtb 基因组及其药物靶点的工具——所谓的功能基因组学——受到限制。在这篇 Pearl 中,我认为,最近在 Mtb 中发展起来的稳健的基于 CRISPR 的遗传学[4]克服了许多先前的限制,并有可能弥合基因组学和 TB 药物发现之间的差距。

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本文引用的文献

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Nature. 2019 Jul;571(7763):72-78. doi: 10.1038/s41586-019-1315-z. Epub 2019 Jun 19.
2
Prediction of ultra-high-order antibiotic combinations based on pairwise interactions.基于两两相互作用的超高效抗生素组合预测。
PLoS Comput Biol. 2019 Jan 30;15(1):e1006774. doi: 10.1371/journal.pcbi.1006774. eCollection 2019 Jan.
3
Bacterial Factors That Predict Relapse after Tuberculosis Therapy.预测结核病治疗后复发的细菌因素。
分子对接、自由能计算、ADMETox研究、密度泛函理论分析以及动力学模拟表明一种色烯糖苷是……中PknG的潜在抑制剂。
Front Chem. 2025 Feb 25;13:1531152. doi: 10.3389/fchem.2025.1531152. eCollection 2025.
4
A Physiologically Relevant In Vitro Model of Nonreplicating Persistent Mycobacterium tuberculosis in Caseum.一种在干酪中无复制持续性结核分枝杆菌的生理相关体外模型。
Curr Protoc. 2025 Mar;5(3):e70118. doi: 10.1002/cpz1.70118.
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Revolutionizing Tuberculosis Management With Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)-Cas Technology: A Comprehensive Literature Review.利用成簇规律间隔短回文重复序列(CRISPR)-Cas技术革新结核病管理:一项综合文献综述
Cureus. 2024 Oct 17;16(10):e71697. doi: 10.7759/cureus.71697. eCollection 2024 Oct.
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