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从南极海冰中分离出的一株降解二甲基巯基丙酸内盐(DMSP)的放线菌NJ-530的全基因组序列

Complete genome sequence of sp. NJ-530, a DMSP-degrading actinobacterium isolated from Antarctic sea ice.

作者信息

Qu Changfeng, Wang Wenyu, Dong Jianjun, Wang Xixi, Gao Xuxu, Zhang Honghai, Zheng Zhou, Yin Hua, Miao Jinlai

机构信息

State Key Laboratory of Biological Fermentation Engineering of Beer, Qingdao, 266100 China.

2First Institute of Oceanography, Ministry of Natural Resources, Qingdao, 266061 China.

出版信息

3 Biotech. 2019 Oct;9(10):363. doi: 10.1007/s13205-019-1889-z. Epub 2019 Sep 18.

Abstract

Dimethylsulfide (DMS), a climatically important gas generated by dimethylsulfoniopropionate (DMSP) degradation, plays an important role in the global sulfur cycle and affects the global climate. Marine bacteria are the primary mediators of DMSP degradation and DMS production. Here, we present the complete genome sequence of sp. NJ-530, isolated from Antarctic sea ice, which utilizes DMSP as a sole carbon and energy source, degrading DMSP into DMS. The genome of strain NJ-530 consists of 7371 protein-coding sequences (CDSs) with 54 tRNA genes and 15 rRNA operons as 5S-16S-23S rRNA. The strain has one circular chromosome of 6,408,544 bp with 6331 CDSs and 62.41% GC content. Genomic annotation revealed that sp. NJ-530 may have a DMSP cleavage gene cluster, including , and , suggesting the existence of the DddD-type DMSP cleavage pathway. The complete genome sequence of sp. NJ-530 will provide useful information for better understanding of the molecular mechanism underlying marine DMSP degradation and Antarctic DMS production.

摘要

二甲基硫醚(DMS)是由二甲基巯基丙酸内盐(DMSP)降解产生的一种对气候有重要影响的气体,在全球硫循环中发挥着重要作用,并影响全球气候。海洋细菌是DMSP降解和DMS产生的主要介质。在此,我们展示了从南极海冰中分离出的菌株NJ - 530的完整基因组序列,该菌株利用DMSP作为唯一的碳源和能源,将DMSP降解为DMS。菌株NJ - 530的基因组由7371个蛋白质编码序列(CDS)、54个tRNA基因和15个作为5S - 16S - 23S rRNA的rRNA操纵子组成。该菌株有一条6,408,544 bp的环状染色体,含有6331个CDS,GC含量为62.41%。基因组注释显示,菌株NJ - 530可能有一个DMSP裂解基因簇,包括dddD、dddP和dddQ,这表明存在DddD型DMSP裂解途径。菌株NJ - 530的完整基因组序列将为更好地理解海洋DMSP降解和南极DMS产生的分子机制提供有用信息。

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