National Research Institute of Fisheries Science, Japan Fisheries Research and Education Agency, 2-12-4 Fukuura, Kanazawa, Yokohama, 236-8648, Kanagawa, Japan.
Heredity (Edinb). 2020 Feb;124(2):299-312. doi: 10.1038/s41437-019-0271-6. Epub 2019 Oct 2.
In this study, we developed a nearly unbiased estimator of contemporary effective mother size in a population, which is based on a known maternal half-sibling relationship found within the same cohort. Our method allows for variance of the average number of offspring per mother (i.e., parental variation, such as age-specific fecundity) and variance of the number of offspring among mothers with identical reproductive potential (i.e., nonparental variation, such as family-correlated survivorship). We also developed estimators of the variance and coefficient of variation of contemporary effective mother size and qualitatively evaluated the performance of the estimators by running an individual-based model. Our results provide guidance for (i) a sample size to ensure the required accuracy and precision when the order of effective mother size is available and (ii) a degree of uncertainty regarding the estimated effective mother size when information about the size is unavailable. To the best of our knowledge, this is the first report to demonstrate the derivation of a nearly unbiased estimator of effective population size; however, its current application is limited to effective mother size and situations, in which the sample size is not particularly small and maternal half-sibling relationships can be detected without error. The results of this study demonstrate the usefulness of a sibship assignment method for estimating effective population size; in addition, they have the potential to greatly widen the scope of genetic monitoring, especially in the situation of small sample size.
在这项研究中,我们开发了一种在人群中估算当代有效母体量的近乎无偏估计量,该估计量基于在同一队列中发现的已知母半同胞关系。我们的方法允许对每个母亲的平均后代数量(即父母变异,如特定年龄的生育力)和具有相同生殖潜力的母亲之间后代数量的变异(即非父母变异,如与家庭相关的存活率)进行方差估计。我们还开发了当代有效母体量的方差和变异系数的估计量,并通过运行基于个体的模型对估计量的性能进行了定性评估。我们的结果为以下方面提供了指导:(i)当有效母体量的顺序可用时,确保所需准确性和精度的样本量,以及(ii)当关于母体量的信息不可用时,关于估计有效母体量的不确定性程度。据我们所知,这是第一个报告,证明了有效种群大小的近乎无偏估计量的推导;然而,其当前的应用仅限于有效母体量和样本量不是特别小且可以无误检测母半同胞关系的情况。这项研究的结果表明了同胞关系分配方法在估计有效种群大小方面的有用性;此外,它们有可能极大地扩大遗传监测的范围,特别是在样本量较小的情况下。