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用于生物分子的属。

Genus for biomolecules.

机构信息

Centre of New Technologies, University of Warsaw, Banacha 2c, 02-097 Warsaw, Poland.

Warsaw School of Economics, Al. Niepodległości 162, 02-554 Warsaw, Poland.

出版信息

Nucleic Acids Res. 2020 Jan 8;48(D1):D1129-D1135. doi: 10.1093/nar/gkz845.

Abstract

The 'Genus for biomolecules' database (http://genus.fuw.edu.pl) collects information about topological structure and complexity of proteins and RNA chains, which is captured by the genus of a given chain and its subchains. For each biomolecule, this information is shown in the form of a genus trace plot, as well as a genus matrix diagram. We assemble such information for all and RNA structures deposited in the Protein Data Bank (PDB). This database presents also various statistics and extensive information about the biological function of the analyzed biomolecules. The database is regularly self-updating, once new structures are deposited in the PDB. Moreover, users can analyze their own structures.

摘要

“生物分子属数据库”(http://genus.fuw.edu.pl)收集关于蛋白质和 RNA 链拓扑结构和复杂度的信息,这些信息由给定链及其子链的属来捕获。对于每个生物分子,这些信息以属迹图和属矩阵图的形式呈现。我们为所有 PDB 中储存的蛋白质和 RNA 结构组装了这些信息。该数据库还提供了关于所分析生物分子的生物学功能的各种统计信息和广泛信息。该数据库会定期自动更新,一旦 PDB 中存入新结构。此外,用户可以分析他们自己的结构。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/32fd/6943057/2e3436038f55/gkz845fig1.jpg

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