Department of Biological Sciences and Centre for Molecular Simulation, University of Calgary, Calgary, Alberta, Canada; Center for Protein Studies, Faculty of Biology, University of Havana, Havana, Cuba.
Center for Protein Studies, Faculty of Biology, University of Havana, Havana, Cuba.
Biophys J. 2019 Nov 5;117(9):1563-1576. doi: 10.1016/j.bpj.2019.09.018. Epub 2019 Sep 20.
Sticholysins are pore-forming toxins of biomedical interest and represent a prototype of proteins acting through the formation of protein-lipid or toroidal pores. Peptides spanning the N-terminus of sticholysins can mimic their permeabilizing activity and, together with the full-length toxins, have been used as a tool to understand the mechanism of pore formation in membranes. However, the lytic mechanism of these peptides and the lipid shape modulating their activity are not completely clear. In this article, we combine molecular dynamics simulations and experimental biophysical tools to dissect different aspects of the pore-forming mechanism of StII, a peptide derived from the N-terminus of sticholysin II (StII). With this combined approach, membrane curvature induction and flip-flop movement of the lipids were identified as two important membrane remodeling steps mediated by StII. Pore formation by this peptide was enhanced by the presence of the negatively curved lipid phosphatidylethanolamine in membranes. This lipid emerged not only as a facilitator of membrane interactions but also as a structural element of the StII pore that is recruited to the ring upon its assembly. Collectively, these, to our knowledge, new findings support a toroidal model for the architecture of the pore formed by StII and provide new molecular insight into the role of phosphatidylethanolamine as a membrane component that can easily integrate into the ring of toroidal pores, thus probably aiding in their stabilization. This study contributes to a better understanding of the molecular mechanism underlying the permeabilizing activity of StII and peptides or proteins acting via a toroidal pore mechanism and offers an informative framework for the optimization of the biomedical application of this and similar molecules.
溶血素是具有生物医学意义的孔形成毒素,代表了通过形成蛋白-脂类或环形孔来发挥作用的蛋白质的原型。跨越溶血素 N 端的肽可以模拟其通透活性,并且与全长毒素一起被用作理解孔在膜中形成的机制的工具。然而,这些肽的裂解机制及其调节其活性的脂质形状尚不完全清楚。在本文中,我们结合分子动力学模拟和实验生物物理工具来剖析溶血素 II (StII) 衍生的 N 端肽(StII)的孔形成机制的不同方面。通过这种组合方法,鉴定了膜曲率诱导和脂质的翻转运动作为 StII 介导的两个重要的膜重塑步骤。存在带负曲率的脂质磷脂酰乙醇胺时,该肽形成孔的能力增强。这种脂质不仅作为膜相互作用的促进剂出现,而且作为 StII 孔的结构元件,在其组装时被募集到环中。总的来说,这些发现(据我们所知)支持了 StII 形成的孔的环形模型,并为磷脂酰乙醇胺作为一种易于整合到环形孔环中的膜成分的作用提供了新的分子见解,从而可能有助于其稳定。该研究有助于更好地理解 StII 及通过环形孔机制发挥作用的肽或蛋白质的通透活性的分子机制,并为优化该和类似分子的生物医学应用提供了有意义的框架。