Microbe Division/Japan Collection of Microorganisms, RIKEN BioResource Research Center, Tsukuba, Ibaraki 305-0074, Japan.
PRIME, Japan Agency for Medical Research and Development (AMED), Tsukuba, Ibaraki 305-0074, Japan.
Int J Syst Evol Microbiol. 2020 Jan;70(1):589-595. doi: 10.1099/ijsem.0.003797.
An obligately anaerobic, Gram-stain-negative, rod or coccobacilli organism was isolated from a faecal sample of a healthy Japanese woman. In the 16S rRNA gene sequence analysis, strain 5BBH33 showed the highest 16S rRNA gene sequence similarity to YIT 11850 (95.9 %), ADV 1053.03 (94.3 %), DSM 19965 (93.1 %), DSM 15470 (92.5 %) and ATCC 33048 (91.4 %). The gene sequence analysis also revealed strain 5BBH33 had relatively low gene sequence similarities (74.4-85.3 %) to other species. Strain 5BBH33 showed 21.8-23.9 % DNA-DNA hybridization values with other species. In addition, the average nucleotide identity values between strain 5BBH33 and other species ranged from 68.7-74.2 %, indicating that this strain should be considered as new species based on whole-genome relatedness. Strain 5BBH33 was asaccharolytic and largely unreactive for commercial kit. However, its growth was enhanced by adding 1 % (w/v) succinate to the medium; strain 5BBH33 was able to decarboxylate succinate to propionate. The strain 5BBH33 genome contained the enzymes involved in succinate utilization. These results improve our understanding of succinate-utilizing bacteria. On the basis of the collected data, strain 5BBH33 represents a novel species in the genus , for which the name sp. nov. is proposed. The type strain of is 5BBH33 (=JCM 33369=DSM 109768).
从一名健康日本女性的粪便样本中分离到一株严格厌氧菌,革兰氏染色阴性,呈杆状或短杆菌状。在 16S rRNA 基因序列分析中,菌株 5BBH33 与 YIT 11850(95.9%)、ADV 1053.03(94.3%)、DSM 19965(93.1%)、DSM 15470(92.5%)和 ATCC 33048(91.4%)的 16S rRNA 基因序列相似度最高。基因序列分析还表明,菌株 5BBH33 与其他种的 基因序列相似度相对较低(74.4-85.3%)。菌株 5BBH33 与其他种的 DNA-DNA 杂交值为 21.8-23.9%。此外,菌株 5BBH33 与其他种之间的平均核苷酸同一性值在 68.7-74.2%之间,表明基于全基因组相关性,该菌株应被视为新种。菌株 5BBH33 为非发酵糖,对大多数商业试剂盒反应不明显。然而,向培养基中添加 1%(w/v)琥珀酸盐可增强其生长;菌株 5BBH33 能够将琥珀酸盐脱羧为丙酸盐。菌株 5BBH33 基因组包含参与琥珀酸利用的酶。这些结果提高了我们对利用琥珀酸的细菌的理解。根据收集的数据,菌株 5BBH33 代表了属中的一个新种,建议将其命名为 sp. nov.。该种的模式菌株为 5BBH33(=JCM 33369=DSM 109768)。