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sp. nov.,分离自石油污染河流沉积物。

sp. nov., isolated from petroleum polluted river sediment.

机构信息

State Key Laboratory of Heavy Oil Processing & Center for Bioengineering and Biotechnology, College of Chemical Engineering, China University of Petroleum (East China), Qingdao 266580, PR China.

Shandong Peanut Research Institute, Qingdao 266100, PR China.

出版信息

Int J Syst Evol Microbiol. 2020 Jan;70(1):364-372. doi: 10.1099/ijsem.0.003763.

Abstract

A Gram-stain-negative, rod-shaped bacterium, motile by means of a single polar flagellum, designated S-6-2, was isolated from petroleum polluted river sediment in Huangdao, Shandong Province, PR China. The 16S rRNA gene sequence analysis revealed that S-6-2 represented a member of the genus , sharing the highest sequence similarities with (97.5 %) and (97.5 %). Phylogenetic analysis based on 16S rRNA gene, concatenated 16S rRNA, , and genes and genome core-genes indicated that S-6-2 was affiliated with the members of the group. The average nucleotide identity (ANI) and genome-to-genome distance between the whole genome sequences of S-6-2 and closely related species of the genus within the group were less than 77.94 % and 20.5 %, respectively. Differences in phenotypic characteristics were also found between S-6-2 and the closely related species. The major cellular fatty acids (>10 %) were summed feature 8 (Cω7/ C ω6), C, Ccyclo and C. The predominant respiratory quinone was ubiquinone 9. The major polar lipids were diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), phosphatidylethanolamine (PE), one unidentified lipid (L1), two unidentified phospholipids (PL1 and PL2) and an aminophospholipid (APL). The DNA G+C content of the genome of S-6-2 was 60.1 mol%. On the basis of the evidence from the polyphasic taxonomic study, strain S-6-2 can be classified as representative of a novel species of the genus , for which the name sp. nov. is proposed. The type strain is S-6-2 (=CGMCC 1.15798=KCTC 52539).

摘要

一株革兰氏阴性、杆状、单极鞭毛运动的细菌,被命名为 S-6-2,从中国山东省黄岛受石油污染的河流沉积物中分离得到。16S rRNA 基因序列分析表明,S-6-2 代表一个属的成员,与 (97.5%)和 (97.5%)的序列相似度最高。基于 16S rRNA 基因、串联 16S rRNA、 、 和 基因以及基因组核心基因的系统发育分析表明,S-6-2 与 群的成员有关。S-6-2 与 群中密切相关的属内种的全基因组序列之间的平均核苷酸同一性(ANI)和基因组到基因组距离均小于 77.94%和 20.5%。S-6-2 与密切相关的种之间也存在表型特征的差异。主要细胞脂肪酸(>10%)为总和特征 8(Cω7/ C ω6)、C、Ccyclo 和 C。主要呼吸醌为泛醌 9。主要极性脂为双磷脂酰甘油(DPG)、磷脂酰甘油(PG)、磷脂酰乙醇胺(PE)、一种未鉴定的脂(L1)、两种未鉴定的磷脂(PL1 和 PL2)和一种氨基磷脂(APL)。S-6-2 基因组的 DNA G+C 含量为 60.1mol%。基于多相分类学研究的证据,菌株 S-6-2 可归类为一个属的代表新种,建议命名为 。模式株为 S-6-2(=CGMCC 1.15798=KCTC 52539)。

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