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sp. nov.,从蚕豆根际中分离得到。

sp. nov., isolated from rhizosphere of broad bean.

机构信息

Department of Plant Pathology and Ministry of Agriculture and Rural Affairs Key Laboratory of Pest Monitoring and Green Management, College of Plant Protection China Agricultural University, Beijing, PR China.

College of Agriculture, Guangxi University, Nanning, PR China.

出版信息

Int J Syst Evol Microbiol. 2020 Sep;70(9):5012-5018. doi: 10.1099/ijsem.0.004373.

Abstract

A Gram-stain-negative aerobic bacterium, strain 11K1, was isolated from a rhizosphere soil of broad bean collected from Qujing, Yunnan, PR China and characterized by using polyphasic taxonomy. The bacterial cells of strain 11K1 were rod-shaped, motile by two polar flagella and positive for oxidase and catalase. Results of phylogenetic analysis based on 16S rRNA gene sequences revealed that the strain had the highest similarities to DSM 13194 (99.52 %), CFBP 5737 (99.45 %), subsp. s NBRC 3904 (99.31 %), DSM 13647 (99.25 %) and JCM11938 (99.24 %). Multilocus sequence analysis using the 16S rRNA, , and gene sequences demonstrated that strain 11K1 was a member of the subgroup within the lineage, but was distant from all closely related species. The average nucleotide identity and DNA-DNA hybridization values were lower than recommended thresholds of 95 and 70 %, respectively, for species delineation. The major isoprenoid quinone of strain 11K1 was ubiquinone (Q-9) and the major cellular fatty acids were C, summed feature 3 (C ω7/C ω6), summed feature 8 (C ω7/C ω6) and C cyclo. The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, aminophospholipid and two unidentified lipids. Based on the results of phenotypic characterization, phylogenetic analysis and genome comparison, strain 11K1 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is 11K1 (=GDMCC 1.1743=KACC 21650).

摘要

一株革兰氏阴性需氧细菌,菌株 11K1,从中国云南曲靖采集的蚕豆根际土壤中分离得到,并通过多相分类学进行了特征描述。菌株 11K1 的细菌细胞呈杆状,通过两个极生鞭毛运动,氧化酶和过氧化氢酶阳性。基于 16S rRNA 基因序列的系统发育分析结果表明,该菌株与 DSM 13194(99.52%)、CFBP 5737(99.45%)、subsp. s NBRC 3904(99.31%)、DSM 13647(99.25%)和 JCM11938(99.24%)的相似度最高。使用 16S rRNA、、和 基因序列进行的多位点序列分析表明,菌株 11K1 是 分支内的 亚群的成员,但与所有密切相关的物种都有很大的距离。平均核苷酸同一性和 DNA-DNA 杂交值均低于种系划分推荐的 95%和 70%的阈值。菌株 11K1 的主要类异戊二烯醌是泛醌(Q-9),主要细胞脂肪酸是 C、总和特征 3(Cω7/Cω6)、总和特征 8(Cω7/Cω6)和 C 环。主要极性脂是磷脂酰乙醇胺、磷脂酰甘油、双磷脂酰甘油、氨基磷脂和两种未鉴定的脂。基于表型特征、系统发育分析和基因组比较的结果,菌株 11K1 代表了 属的一个新种,提议使用新种名 sp. nov.。模式菌株为 11K1(=GDMCC 1.1743=KACC 21650)。

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