Department of Medicine and Epidemiology, School of Veterinary Medicine, University of California, Davis, 2108 Tupper Hall, Davis, CA 95616-5270, USA.
College of Veterinary Medicine, Mississippi State University, 127 Experiment Station Road, PO Box 197, Stoneville, MS 38776, USA.
Int J Syst Evol Microbiol. 2020 Feb;70(2):857-867. doi: 10.1099/ijsem.0.003838.
A recently described emergent disease of ornamental fish has been associated with an species positive for the surface protective antigen () C gene. Whole genome sequencing was performed on five isolates from diseased ornamental fish. In addition, these isolates were compared to and other -positive species isolated from terrestrial and marine mammals, birds and fish using multi-locus sequence analysis (MLSA). The genomes of fish pathogenic isolates were genetically distinct from , sharing 86.61-86.94 % average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values of 31.6-32.2 %, but 99.01-99.11 % ANI and 90.8-91.9 % dDDH values with the uncharacterized -positive sp. strain 2 isolated from swine. The findings indicate the -positive fish and swine isolates are conspecific and represent a previously unrecognized taxon. While phylogenies inferred from MLSA sequences confirm this conclusion, slight genetic differences between the fish isolates and swine strain 2 were indicated. Bath immersion challenge trials were conducted using tiger barbs () exposed by immersion to 10 c.f.u. ml of three fish pathogenic species, and three and two isolates as a model of infection. Thirty days post-challenge, cumulative mean percentage survival was 37 % for the , 100 % for the and 13 % for the isolates, revealing differences in virulence among the various genotypes in fish. Genetic findings and observed differences in virulence demonstrate the fish pathogenic isolates represent a novel species, for which the name sp. nov. is proposed. The type strain is 15TAL0474 (=NRRL B-65533=ATCC-TSD-175=DSM 110099).
一种新描述的观赏鱼传染病与一种阳性表面保护抗原()C 基因的 物种有关。对来自患病观赏鱼的 5 个 分离株进行了全基因组测序。此外,使用多位点序列分析(MLSA)将这些 分离株与从陆地和海洋哺乳动物、鸟类和鱼类中分离出的其他 -阳性 物种进行了比较。鱼类病原菌 分离株的基因组与 不同,平均核苷酸同一性(ANI)为 86.61-86.94%,数字 DNA-DNA 杂交(dDDH)值为 31.6-32.2%,但与未鉴定的 -阳性 分离株 sp. strain 2 有 99.01-99.11%的 ANI 和 90.8-91.9%的 dDDH 值,后者来自猪。这些发现表明,阳性的鱼类和猪分离株是同一种群,代表了一个以前未被识别的分类群。虽然基于 MLSA 序列推断的系统发育证实了这一结论,但鱼类分离株和猪株 2 之间存在轻微的遗传差异。通过将虎鱼()浸入含有 10 c.f.u. ml 的三种鱼类病原菌、三种 以及两种 分离株的溶液中,进行了浸泡感染试验,以此模拟感染。在挑战后 30 天,三种鱼类病原菌的累积平均存活率分别为 37%、100%和 13%,这表明不同鱼类基因型的毒力存在差异。遗传研究结果和观察到的毒力差异表明,鱼类病原菌 分离株代表了一个新的物种,提议将其命名为 sp. nov.。其模式株为 15TAL0474(=NRRL B-65533=ATCC-TSD-175=DSM 110099)。