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全面分析稽留流产中 microRNAs 的差异表达谱。

Comprehensive analysis of the differential expression profile of microRNAs in missed abortion.

机构信息

Department of Obstetrics and Gynecology, The Second Affiliated Hospital of Soochow University, Suzhou, Jiangsu, P.R. China.

Department of Obstetrics and Gynecology, Fengcheng Hospital, Fengxian District, Shanghai, P.R. China.

出版信息

Kaohsiung J Med Sci. 2020 Feb;36(2):114-121. doi: 10.1002/kjm2.12144. Epub 2019 Nov 5.

Abstract

To screen the key circulating microRNAs (miRNAs) involved in missed abortion (MA) and explore their role in MA process. We examined the miRNA profile from the serum of three MA patients and three early pregnancy induced abortion patients (controls) by next-generation sequencing. We analyzed the target genes of the differentially expressed (DE) miRNAs to analyze the function and pathway enrichment using Gene Ontology and Kyoto Encyclopedia of Genes and Genomes, respectively. We validated five candidate miRNAs by real time-qPCR. Integrated miRNA-mRNA-pathway network analysis was performed to show the interaction network of the candidate miRNAs and their target genes of interest with the involved pathways. It was observed that 227 miRNAs were differently expressed between the MA group and the early pregnancy control group, with 58 miRNAs downregulated and 169 miRNAs upregulated in the MA group. Real-time qPCR results revealed that expression of the five candidate miRNAs, namely hsa-miR-22-3p, hsa-miR-145-3p, hsa-miR-107, hsa-miR-361-3p, and hsa-miR-378c, was consistent with the miRNA data obtained by sequencing. Integrated miRNA-mRNA-pathway network analysis illustrated that target genes of the candidate miRNAs were mainly involved in the PI3K-Akt signaling pathway, HIF-1 signaling pathway, and VEGF signaling pathway, which would have potential significance in pregnancy and MA. We are the first to reveal the DE miRNAs involved in MA and illustrate their functional interaction network. These results might provide potential circulating biomarkers and new therapeutic targets for MA.

摘要

为了筛选与稽留流产(MA)相关的关键循环microRNAs(miRNAs),并探讨其在 MA 过程中的作用。我们通过下一代测序,对 3 名 MA 患者和 3 名早期妊娠人工流产患者(对照组)的血清 miRNA 谱进行了检测。我们分析了差异表达(DE)miRNAs 的靶基因,分别使用基因本体论和京都基因与基因组百科全书分析功能和通路富集。我们通过实时 qPCR 验证了 5 个候选 miRNA。通过整合 miRNA-mRNA-通路网络分析,展示候选 miRNA 及其靶基因与涉及通路的相互作用网络。结果显示,MA 组和早期妊娠对照组之间有 227 个 miRNA 表达不同,其中 MA 组有 58 个 miRNA 下调,169 个 miRNA 上调。实时 qPCR 结果显示,5 个候选 miRNA(hsa-miR-22-3p、hsa-miR-145-3p、hsa-miR-107、hsa-miR-361-3p 和 hsa-miR-378c)的表达与测序获得的 miRNA 数据一致。整合 miRNA-mRNA-通路网络分析表明,候选 miRNA 的靶基因主要参与 PI3K-Akt 信号通路、HIF-1 信号通路和 VEGF 信号通路,这可能对妊娠和 MA 具有潜在意义。我们首次揭示了与 MA 相关的 DE miRNAs,并阐明了它们的功能相互作用网络。这些结果可能为 MA 提供潜在的循环生物标志物和新的治疗靶点。

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