Key Laboratory of Microbial Resources (Ministry of Agriculture, China), Institute of Agricultural Resources and Regional Planning, CAAS, Beijing 100081, PR China.
College of Bioscience and Engineering, Jiangxi Agricultural University, Nanchang 330045, PR China.
Int J Syst Evol Microbiol. 2019 Dec;69(12):3910-3916. doi: 10.1099/ijsem.0.003705.
A Gram-stain-negative, aerobic, motile, rod-shaped bacterium, designated strain LAM9072, was isolated from a sample of a sulfonylurea herbicide-degrading consortium enriched with saline soil. The optimal temperature and pH for the growth of strain LAM9072 were 35 °C and 7.0, respectively. Strain LAM9072 could grow in the presence of NaCl up to 9 % (w/v). Comparative analysis of the 16S rRNA gene sequences revealed that strain LAM9072 was closely related to members of the family , with the highest similarities to MACL01 (97.7 %) and S2753 (97.7 %). Strain LAM9072 formed a distinct phylogenetic subclade within the genus in the 16S rRNA gene phylogenetic trees. The results of multi-locus sequence analysis revealed a distinct lineage with MACL01 as its closest relative. The genomic G+C content was 50.2 mol%. The DNA-DNA hybridization values between strain LAM9072 and LMG 22194 and LMG 28894 were 41.6 and 22.2 %, respectively. The average nucleotide identity values were 90.9 and 78.8 %, respectively, by comparing the draft genome sequences of strain LAM9072 and LMG 22194 and LMG 28894. The major fatty acids were summed feature 3 (Cω6 and/or Cω7), C and summed feature 8 (Cω7 and/or Cω6). Ubiquinone 8 was detected as the predominant respiratory quinone. The main polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, aminophospholipid and four unidentified lipids. Based on its phenotypic characteristics and the results of genotypic analyses, we propose that strain LAM9072 represents a novel species, for which the name sp. nov. is proposed. The type strain is LAM9072 (=ACCC 19961=JCM 30852).
一株革兰氏阴性、需氧、能动、杆状细菌,被命名为 LAM9072 菌株,从富含盐水土壤的磺酰脲类除草剂降解菌富集物中分离得到。LAM9072 菌株的最适生长温度和 pH 值分别为 35°C 和 7.0。该菌株可以在含有高达 9%(w/v)NaCl 的环境中生长。16S rRNA 基因序列的比较分析表明,LAM9072 菌株与家族成员关系最为密切,与 MACL01(97.7%)和 S2753(97.7%)最为相似。在 16S rRNA 基因系统发育树中,LAM9072 菌株在属内形成了一个独特的系统发育分支。多位点序列分析的结果表明,它与 MACL01 形成了一个独特的谱系。基因组 G+C 含量为 50.2mol%。LAM9072 菌株与 LMG 22194 和 LMG 28894 的 DNA-DNA 杂交值分别为 41.6%和 22.2%。比较 LAM9072 菌株和 LMG 22194 和 LMG 28894 的基因组草图序列,其平均核苷酸同一性值分别为 90.9%和 78.8%。该菌株的主要脂肪酸为 summed feature 3(Cω6 和/或 Cω7)、C 和 summed feature 8(Cω7 和/或 Cω6)。检测到泛醌 8 作为主要的呼吸醌。主要的极性脂为双磷脂酰甘油、磷脂酰甘油、磷脂酰乙醇胺、氨基磷脂和四种未鉴定的脂类。基于其表型特征和基因型分析结果,我们建议将该菌株命名为 sp. nov.。其模式菌株为 LAM9072(=ACCC 19961=JCM 30852)。