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叶绿素 a 和 b 单体和二聚体的光激子。

Optical excitations of chlorophyll a and b monomers and dimers.

机构信息

School of Physical Sciences and Nanotechnology, Yachay Tech University, Urcuquí 100119, Ecuador.

Department of Applied Mathematics, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada.

出版信息

J Chem Phys. 2019 Nov 7;151(17):174102. doi: 10.1063/1.5121721.

Abstract

A necessary first step in the development of technologies such as artificial photosynthesis is understanding the photoexcitation process within the basic building blocks of naturally occurring light harvesting complexes (LHCs). The most important of these building blocks in biological LHCs such as LHC II from green plants are the chlorophyll a (Chl a) and chlorophyll b (Chl b) chromophores dispersed throughout the protein matrix. However, efforts to describe such systems are still hampered by the lack of computationally efficient and accurate methods that are able to describe optical absorption in large biomolecules. In this work, we employ a highly efficient linear combination of atomic orbitals (LCAOs) to represent the Kohn-Sham (KS) wave functions at the density functional theory (DFT) level and perform time-dependent density functional theory (TDDFT) calculations in either the reciprocal space and frequency domain (LCAO-TDDFT-k-ω) or real space and time domain (LCAO-TDDFT-r-t) of the optical absorption spectra of Chl a and b monomers and dimers. We find that our LCAO-TDDFT-k-ω and LCAO-TDDFT-r-t calculations reproduce results obtained with a plane-wave (PW) representation of the KS wave functions (PW-TDDFT-k-ω) but with a significant reduction in computational effort. Moreover, by applying the Gritsenko, van Leeuwen, van Lenthe, and Baerends solid and correlation derivative discontinuity correction Δ to the KS eigenenergies, with both LCAO-TDDFT-k-ω and LCAO-TDDFT-r-t methods, we are able to semiquantitatively reproduce the experimentally measured photoinduced dissociation results. This work opens the path to first principles calculations of optical excitations in macromolecular systems.

摘要

在开发人工光合作用等技术的过程中,理解天然光捕获复合物(LHC)基本构建块内的光激发过程是必要的第一步。在绿色植物的 LHC II 等生物 LHC 中,这些构建块中最重要的是分散在蛋白质基质中的叶绿素 a(Chl a)和叶绿素 b(Chl b)发色团。然而,描述此类系统的努力仍然受到缺乏能够描述大分子光学吸收的计算效率高且准确的方法的阻碍。在这项工作中,我们采用高度有效的原子轨道线性组合(LCAO)来表示密度泛函理论(DFT)水平上的 Kohn-Sham(KS)波函数,并在光学吸收光谱的倒易空间和频域(LCAO-TDDFT-k-ω)或实空间和时域(LCAO-TDDFT-r-t)中执行 Chl a 和 b 单体和二聚体的时间相关密度泛函理论(TDDFT)计算。我们发现,我们的 LCAO-TDDFT-k-ω 和 LCAO-TDDFT-r-t 计算结果与使用 KS 波函数平面波(PW)表示(PW-TDDFT-k-ω)的计算结果吻合,但计算工作量大大减少。此外,通过将 Grittsenko、van Leeuwen、van Lenthe 和 Baerends 固体和相关导数不连续性校正 Δ应用于 KS 本征能,我们使用 LCAO-TDDFT-k-ω 和 LCAO-TDDFT-r-t 方法,能够半定量地再现实验测量的光诱导解离结果。这项工作为大分子系统中光学激发的第一性原理计算开辟了道路。

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