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经济合作与发展组织(OECD)致突变性测试指南TG471所要求的所有细菌菌株都是必需的吗?

Are all bacterial strains required by OECD mutagenicity test guideline TG471 needed?

作者信息

Williams Richard V, DeMarini David M, Stankowski Leon F, Escobar Patricia A, Zeiger Errol, Howe Jonathan, Elespuru Rosalie, Cross Kevin P

机构信息

Lhasa Limited, 2 Canal Wharf, Leeds, LS11 5PS, United Kingdom.

U.S. Environmental Protection Agency, Research Triangle Park, NC, 27511, United States.

出版信息

Mutat Res Genet Toxicol Environ Mutagen. 2019 Dec;848:503081. doi: 10.1016/j.mrgentox.2019.503081. Epub 2019 Aug 9.

Abstract

The International Workshop on Genotoxicity Testing (IWGT) meets every four years to seek consensus on difficult or conflicting approaches to genotoxicity testing based upon experience, available data, and analysis techniques. At the 2017 IWGT meeting in Tokyo, one working group addressed the sensitivity and selectivity of the bacterial strains specified in the Organization for Economic Cooperation and Development (OECD) Test Guideline TG471 to recommend possible modification of the test guideline. Three questions were posed: (1) Although TA100 is derived from TA1535, does TA1535 detect any mutagens that are not detected by TA100? (2) Among the options of Salmonella TA1537, TA97 or TA97a, are these strains truly equivalent? (3) Because there is a choice to use one of either E. coli WP2 uvrA, E. coli WP2 uvrA pKM101, or Salmonella TA102, are these strains truly equivalent? To answer these questions, we analyzed published bacterial mutation data in multiple strains from large (>10,000 compound) databases from Leadscope and Lhasa Limited and anonymized data for 53 compounds tested in TA1535 and TA100 provided by a pharmaceutical company. Our analysis involved (1) defining criteria for determining selective responses when using different strains; (2) identifying compounds producing selective responses based upon author calls; (3) confirming selective responses by visually examining dose-response data and considering experimental conditions; (4) using statistical methods to quantify the responses; (5) performing limited additional direct-comparison testing; and (6) determining the chemical classes producing selective responses. We found that few mutagens would fail to be detected if the test battery did not include Salmonella strains TA1535 (8/1167), TA1537 (2/247), TA102 (4/46), and E. coli WP2 uvrA (2/21). Of the mutagens detected by the full TG471 strain battery, 93% were detected using only strains TA98 and TA100; consideration of results from in vitro genotoxicity assays that detect clastogenicity increased this to 99%.

摘要

遗传毒性测试国际研讨会(IWGT)每四年召开一次,旨在根据经验、现有数据和分析技术,就遗传毒性测试中存在困难或相互冲突的方法达成共识。在2017年于东京召开的IWGT会议上,一个工作组探讨了经济合作与发展组织(OECD)测试指南TG471中规定的细菌菌株的敏感性和选择性,以建议对测试指南进行可能的修改。提出了三个问题:(1)尽管TA100源自TA1535,但TA1535能否检测到TA100未检测到的任何诱变剂?(2)在沙门氏菌TA1537、TA97或TA97a这些选项中,这些菌株是否真的等效?(3)由于可以选择使用大肠杆菌WP2 uvrA、大肠杆菌WP2 uvrA pKM101或沙门氏菌TA102中的一种,这些菌株是否真的等效?为了回答这些问题,我们分析了来自Leadscope和拉萨有限公司的大型(>10,000种化合物)数据库中多个菌株的已发表细菌突变数据,以及一家制药公司提供的在TA1535和TA100中测试的53种化合物的匿名数据。我们的分析包括:(1)定义使用不同菌株时确定选择性反应的标准;(2)根据作者的判断确定产生选择性反应的化合物;(3)通过直观检查剂量反应数据并考虑实验条件来确认选择性反应;(4)使用统计方法量化反应;(5)进行有限的额外直接比较测试;(6)确定产生选择性反应的化学类别。我们发现,如果测试组合不包括沙门氏菌菌株TA1535(8/1167)、TA1537(2/247)、TA102(4/46)和大肠杆菌WP2 uvrA(2/21),很少有诱变剂会未被检测到。在完整的TG471菌株组合检测到的诱变剂中,仅使用TA98和TA100菌株就能检测到93%;考虑到检测断裂剂的体外遗传毒性试验结果,这一比例提高到了99%。

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