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通过全外显子组测序鉴定原发性小儿心肌病中的基因突变

Identification of Gene Mutations in Primary Pediatric Cardiomyopathy by Whole Exome Sequencing.

作者信息

Rojnueangnit Kitiwan, Sirichongkolthong Boonchu, Wongwandee Ratthapon, Khetkham Thanitchet, Noojarern Saisuda, Khongkraparn Arthaporn, Wattanasirichaigoon Duangrurdee

机构信息

Department of Pediatrics, Faculty of Medicine, Thammasat University, Pathumthani, Thailand.

Divison of Forensic Medicine, Thammasat University Hospital, Pathumthani, Thailand.

出版信息

Pediatr Cardiol. 2020 Jan;41(1):165-174. doi: 10.1007/s00246-019-02240-x. Epub 2019 Nov 11.

Abstract

Pediatric primary cardiomyopathy is rare but serious, having high mortality; hypertrophic and dilated types are the most common. Its etiology has been mainly considered idiopathic; however, next generation sequencing techniques have revealed nearly half of idiopathic pediatric cases arose from specific genetic mutations. Therefore, our study aimed to identify the genetic causes of primary idiopathic cardiomyopathy. Newborns to 15-year old patients with this condition were recruited between March 2016 and May 2017 at Thammasat University Hospital. Complete patient history and physical examination data were collected by a geneticist with cardiac examinations and echocardiograms by pediatric cardiologists. Whole exome sequencing was performed for all. Of the 12 patients enrolled, 5 cases were dilated type and 7 hypertrophic. Two with dilated type were excluded during follow-up as cause was determined (hypocalcemia and pacemaker induced). A list of 118 genes for cardiomyopathy was analyzed in the remaining 10 cases. Pathogenic and likely pathogenic mutations were identified in 5 patients: HRAS, PTPN11, SOS1, FLNC and TXNRD2; half our patients were not actually idiopathic. Despite its high cost, genetic testing is useful for determining familial risk as well as predicting patient cardiomyopathy progress.

摘要

小儿原发性心肌病罕见但严重,死亡率高;肥厚型和扩张型最为常见。其病因主要被认为是特发性的;然而,新一代测序技术显示,近一半的小儿特发性病例是由特定基因突变引起的。因此,我们的研究旨在确定原发性特发性心肌病的遗传原因。2016年3月至2017年5月期间,在泰国国立法政大学医院招募了患有这种疾病的新生儿至15岁患者。由遗传学家收集完整的患者病史和体格检查数据,并由儿科心脏病专家进行心脏检查和超声心动图检查。对所有患者进行全外显子组测序。在纳入的12例患者中,5例为扩张型,7例为肥厚型。2例扩张型患者在随访期间因病因明确(低钙血症和起搏器诱发)而被排除。对其余10例患者分析了118个心肌病相关基因列表。在5例患者中鉴定出致病和可能致病的突变:HRAS、PTPN11、SOS1、FLNC和TXNRD2;我们一半的患者实际上并非特发性。尽管基因检测成本高昂,但它对于确定家族风险以及预测患者心肌病进展很有用。

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