Odenkirk Melanie T, Baker Erin S
Department of Chemistry, North Carolina State University, Raleigh, NC, USA.
Methods Mol Biol. 2020;2084:35-54. doi: 10.1007/978-1-0716-0030-6_2.
Metabolites and xenobiotics are small molecules with a molecular weight that often falls below 600 Da. Over the last few decades, multiple small molecule databases have been curated listing structures, masses, and fragmentation spectra possible in metabolomic and exposomic measurements. To date only a small portion of the spectra in these databases are experimentally derived due to the high expense of obtaining, synthesizing, and analyzing standards. A vast majority of spectra have thus been created using theoretical programs to fit the available experimental data. The errors associated with theoretical data have however caused problems with current small molecule identifications, and accurate quantitation as searching the databases using just one or two analysis dimensions (i.e., chromatography retention times and mass spectrometry (MS) m/z values) results in numerous annotations for each experimental feature. Additional analysis dimensions are therefore needed to better annotate and identify small molecules. Drift tube ion mobility spectrometry coupled with MS (DTIMS-MS) is a promising technique to address this challenge as it is able to perform rapid structural evaluations of small molecules in complex matrices by assessing the collision cross section values for each in addition to their m/z values. The use of IMS in conjunction with other separation techniques such as gas or liquid chromatography and MS has therefore enabled more accurate identifications for the small molecules present in complex biological and environmental samples. Here, we present a review of relevant parameter considerations for DTIMS application with emphasis on xenobiotics and metabolomics isomer separations.
代谢物和外源性物质是分子量通常低于600道尔顿的小分子。在过去几十年中,已经整理了多个小分子数据库,列出了代谢组学和暴露组学测量中可能出现的结构、质量和碎片光谱。由于获取、合成和分析标准品的成本高昂,迄今为止,这些数据库中只有一小部分光谱是通过实验得出的。因此,绝大多数光谱是使用理论程序来拟合可用的实验数据创建的。然而,与理论数据相关的误差给当前的小分子鉴定带来了问题,并且由于仅使用一两个分析维度(即色谱保留时间和质谱(MS)质荷比)在数据库中进行搜索会导致每个实验特征有大量注释,从而影响了准确的定量分析。因此,需要额外的分析维度来更好地注释和鉴定小分子。漂移管离子迁移谱与质谱联用(DTIMS-MS)是一种很有前景的技术,可以应对这一挑战,因为它除了能够评估小分子的质荷比之外,还能够通过评估每个小分子的碰撞截面值,对复杂基质中的小分子进行快速结构评估。因此,将离子迁移谱与其他分离技术(如气相或液相色谱和质谱)结合使用,能够更准确地鉴定复杂生物和环境样品中存在的小分子。在此,我们对DTIMS应用的相关参数考量进行综述,重点关注外源性物质和代谢组学异构体的分离。