从变质生牛肉中分离出的酯丁酸梭菌DSM 14864亚种的基因组序列草图
Draft Genome Sequence of Clostridium estertheticum subsp. DSM 14864, Isolated from Spoiled Uncooked Beef.
作者信息
Palevich Nikola, Palevich Faith P, Maclean Paul H, Jauregui Ruy, Altermann Eric, Mills John, Brightwell Gale
机构信息
AgResearch Limited, Grasslands Research Centre, Palmerston North, New Zealand
AgResearch Limited, Grasslands Research Centre, Palmerston North, New Zealand.
出版信息
Microbiol Resour Announc. 2019 Nov 21;8(47):e01275-19. doi: 10.1128/MRA.01275-19.
Abstract
subsp. type strain DSM 14864 (ATCC 51254) was isolated from vacuum-packaged refrigerated spoiled beef. This report describes the generation and annotation of the 5.0-Mb draft genome sequence of subsp. DSM 14864.
摘要
亚种。模式菌株DSM 14864（ATCC 51254）从真空包装冷藏变质牛肉中分离得到。本报告描述了亚种DSM 14864的5.0 Mb基因组草图序列的生成和注释。
相似文献
1
Draft Genome Sequence of Clostridium estertheticum subsp. DSM 14864, Isolated from Spoiled Uncooked Beef.从变质生牛肉中分离出的酯丁酸梭菌DSM 14864亚种的基因组序列草图
Microbiol Resour Announc. 2019 Nov 21;8(47):e01275-19. doi: 10.1128/MRA.01275-19.
2
Characterization of novel psychrophilic clostridia from an Antarctic microbial mat: description of Clostridium frigoris sp. nov., Clostridium lacusfryxellense sp. nov., Clostridium bowmanii sp. nov. and Clostridium psychrophilum sp. nov. and reclassification of Clostridium laramiense as Clostridium estertheticum subsp. laramiense subsp. nov.来自南极微生物垫的新型嗜冷梭菌的特性：冷栖梭菌新种、弗里克斯湖梭菌新种、鲍曼梭菌新种和嗜冷梭菌新种的描述以及将拉腊米梭菌重新分类为审美梭菌拉腊米亚种新亚种
Int J Syst Evol Microbiol. 2003 Jul;53(Pt 4):1019-1029. doi: 10.1099/ijs.0.02554-0.
3
Draft Genome Sequence of Clostridium estertheticum-Like Strain FP3, Isolated from Spoiled Uncooked Lamb.从变质生羊肉中分离出的类酯丁酸梭菌菌株FP3的基因组序列草图
Microbiol Resour Announc. 2020 May 14;9(20):e00434-20. doi: 10.1128/MRA.00434-20.
4
Draft Genome Sequence of Clostridium estertheticum-like Strain FP4, Isolated from Spoiled Uncooked Lamb.从变质生羊肉中分离出的类产酯梭菌FP4菌株的基因组序列草图
Microbiol Resour Announc. 2020 May 7;9(19):e00338-20. doi: 10.1128/MRA.00338-20.
5
Products of glucose and lactate fermentation, and utilization of amino acids by Clostridium estertheticum subspp. laramiense and estertheticum growing in meat juice medium.产葡萄糖和乳酸发酵产物，以及林肉醭梭菌亚种和产酯梭菌在肉汁培养基中利用氨基酸。
J Food Prot. 2010 Jul;73(7):1348-52. doi: 10.4315/0362-028x-73.7.1348.
6
Draft Genome Sequence of Psychrotolerant sp. Strain M14, Isolated from Spoiled Uncooked Venison.从变质生鹿肉中分离出的耐冷菌属菌株M14的基因组序列草图
Microbiol Resour Announc. 2020 Apr 16;9(16):e00314-20. doi: 10.1128/MRA.00314-20.
7
Substrate utilization by Clostridium estertheticum cultivated in meat juice medium.在肉汁培养基中培养的产酯梭菌的底物利用情况。
Int J Food Microbiol. 2009 Jan 15;128(3):501-5. doi: 10.1016/j.ijfoodmicro.2008.10.024. Epub 2008 Oct 31.
8
Complete Genome Sequence of DSM 8809, a Microbe Identified in Spoiled Vacuum Packed Beef.DSM 8809的全基因组序列，DSM 8809是一种在变质真空包装牛肉中鉴定出的微生物。
Front Microbiol. 2016 Nov 11;7:1764. doi: 10.3389/fmicb.2016.01764. eCollection 2016.
9
Whole-Genome Sequencing of sp. Strain FP2, Isolated from Spoiled Venison.从变质鹿肉中分离出的sp.菌株FP2的全基因组测序
Microbiol Resour Announc. 2020 Apr 30;9(18):e00334-20. doi: 10.1128/MRA.00334-20.
10
Taxonomic studies on a psychrophilic Clostridium from vacuum-packed beef: description of Clostridium estertheticum sp. nov.对来自真空包装牛肉的嗜冷梭菌的分类学研究：新种嗜温梭菌的描述
FEMS Microbiol Lett. 1992 Sep 15;75(2-3):235-40. doi: 10.1016/0378-1097(92)90410-p.
引用本文的文献
1
Occurrence of genes encoding spore germination in species that cause meat spoilage.导致肉类腐败的 种属中存在编码孢子萌发的基因。
Microb Genom. 2022 Feb;8(2). doi: 10.1099/mgen.0.000767.
2
Bacterial Diversity Profiling of the New Zealand Parasitic Blowfly Lucilia sericata Based on 16S rRNA Gene Amplicon Sequencing.基于16S rRNA基因扩增子测序的新西兰寄生性绿蝇丝光绿蝇的细菌多样性分析
Microbiol Resour Announc. 2021 May 13;10(19):e00257-21. doi: 10.1128/MRA.00257-21.
3
16S rRNA Gene Amplicon Profiling of the New Zealand Parasitic Blowfly Calliphora vicina.新西兰寄生丽蝇（Calliphora vicina）的16S rRNA基因扩增子分析
Microbiol Resour Announc. 2021 May 6;10(18):e00289-21. doi: 10.1128/MRA.00289-21.
4
Draft Genome Sequence of Clostridium estertheticum CEST001, Belonging to a Novel Subspecies of , Isolated from Chilled Vacuum-Packed Lamb Meat Imported to Switzerland.从进口到瑞士的冷藏真空包装羊肉中分离得到的属于梭状芽胞杆菌新亚种的酯丁酸梭菌CEST001的基因组序列草图
Microbiol Resour Announc. 2020 Aug 13;9(33):e00806-20. doi: 10.1128/MRA.00806-20.
5
Draft Genome Sequence of Clostridium estertheticum-Like Strain FP3, Isolated from Spoiled Uncooked Lamb.从变质生羊肉中分离出的类酯丁酸梭菌菌株FP3的基因组序列草图
Microbiol Resour Announc. 2020 May 14;9(20):e00434-20. doi: 10.1128/MRA.00434-20.
6
Draft Genome Sequence of Clostridium estertheticum-like Strain FP4, Isolated from Spoiled Uncooked Lamb.从变质生羊肉中分离出的类产酯梭菌FP4菌株的基因组序列草图
Microbiol Resour Announc. 2020 May 7;9(19):e00338-20. doi: 10.1128/MRA.00338-20.
7
Whole-Genome Sequencing of sp. Strain FP2, Isolated from Spoiled Venison.从变质鹿肉中分离出的sp.菌株FP2的全基因组测序
Microbiol Resour Announc. 2020 Apr 30;9(18):e00334-20. doi: 10.1128/MRA.00334-20.
8
Draft Genome Sequence of sp. Strain FP1, with Similarity to , Isolated from Spoiled Lamb.从变质羊肉中分离得到的与[具体物种]相似的[菌株名称]sp. 菌株FP1的基因组序列草图
Microbiol Resour Announc. 2020 Apr 30;9(18):e00321-20. doi: 10.1128/MRA.00321-20.
9
Draft Genome Sequence of Psychrotolerant sp. Strain M14, Isolated from Spoiled Uncooked Venison.从变质生鹿肉中分离出的耐冷菌属菌株M14的基因组序列草图
Microbiol Resour Announc. 2020 Apr 16;9(16):e00314-20. doi: 10.1128/MRA.00314-20.
本文引用的文献
1
Spoilage of Vacuum-Packaged Refrigerated Beef by Clostridium.梭状芽孢杆菌导致真空包装冷藏牛肉变质
J Food Prot. 1989 Jun;52(6):424-426. doi: 10.4315/0362-028X-52.6.424.
2
dbCAN2: a meta server for automated carbohydrate-active enzyme annotation.dbCAN2：一个用于自动化碳水化合物活性酶注释的元服务器。
Nucleic Acids Res. 2018 Jul 2;46(W1):W95-W101. doi: 10.1093/nar/gky418.
3
GAMOLA2, a Comprehensive Software Package for the Annotation and Curation of Draft and Complete Microbial Genomes.GAMOLA2，一个用于注释和管理草图及完整微生物基因组的综合软件包。
Front Microbiol. 2017 Mar 23;8:346. doi: 10.3389/fmicb.2017.00346. eCollection 2017.
4
Complete Genome Sequence of DSM 8809, a Microbe Identified in Spoiled Vacuum Packed Beef.DSM 8809的全基因组序列，DSM 8809是一种在变质真空包装牛肉中鉴定出的微生物。
Front Microbiol. 2016 Nov 11;7:1764. doi: 10.3389/fmicb.2016.01764. eCollection 2016.
5
Fast and sensitive protein alignment using DIAMOND.使用 DIAMOND 进行快速灵敏的蛋白质比对。
Nat Methods. 2015 Jan;12(1):59-60. doi: 10.1038/nmeth.3176. Epub 2014 Nov 17.
6
A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data.A5-miseq：一种用于从Illumina MiSeq数据组装微生物基因组的更新流程。
Bioinformatics. 2015 Feb 15;31(4):587-9. doi: 10.1093/bioinformatics/btu661. Epub 2014 Oct 22.
7
InterProScan 5: genome-scale protein function classification.InterProScan 5：基因组规模的蛋白质功能分类。
Bioinformatics. 2014 May 1;30(9):1236-40. doi: 10.1093/bioinformatics/btu031. Epub 2014 Jan 21.
8
Genetic manipulation of Clostridium difficile.艰难梭菌的基因操作
Curr Protoc Microbiol. 2011 Feb;Chapter 9:Unit 9A.2. doi: 10.1002/9780471729259.mc09a02s20.
9
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics.碳水化合物活性酶数据库（CAZy）：糖原组学的专业资源。
Nucleic Acids Res. 2009 Jan;37(Database issue):D233-8. doi: 10.1093/nar/gkn663. Epub 2008 Oct 5.
10
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.Blast2GO：功能基因组学研究中用于注释、可视化和分析的通用工具。
Bioinformatics. 2005 Sep 15;21(18):3674-6. doi: 10.1093/bioinformatics/bti610. Epub 2005 Aug 4.
Zotero 插件