College of Horticulture and Gardening, Yangtze University, Jingzhou 434025, China.
State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China.
Biomolecules. 2019 Nov 21;9(12):763. doi: 10.3390/biom9120763.
The invertase gene family in plants is composed of two subfamilies of enzymes, namely, acid- and neutral/alkaline invertases (cytosolic invertase, CIN). Both can irreversibly cleave sucrose into fructose and glucose, which are thought to play key roles in carbon metabolism and plant growth. CINs are widely found in plants, but little is reported about this family. In this paper, a comparative genomic approach was used to analyze the CIN gene family in , including , , , and . A total of 40 CINs were identified in five plants, and sequence features, phylogenetic relationships, motif compositions, gene structure, collinear relationship, and expression profile were further analyzed. Sequence analysis revealed a remarkable conservation of CINs in sequence length, gene number, and molecular weight. The previously verified four amino acid residues (D188, E414, Arg430, and Ser547) were also observed in 39 out of 40 CINs in our study, showing to be deeply conserved. The CIN gene family could be distinguished into groups α and β, and α is further subdivided into subgroups α1 and α2 in our phylogenetic tree. More remarkably, each species has an average of four CINs in the α and β groups. Marked interspecies conservation and collinearity of CINs were also further revealed by chromosome mapping. Exon-intron configuration and conserved motifs were consistent in each of these α and β groups on the basis of analysis. Expression analysis indicated that CINs were constitutively expressed and share similar expression profiles in all tested samples from and . In addition, in CIN genes of the tomato and potato in response to abiotic and biotic stresses, phytohormones also performed. Overall, CINs in were encoded by a small and highly conserved gene family, possibly reflecting structural and functional conservation in . These results lay the foundation for further expounding the functional characterization of CIN genes and are also significant for understanding the evolutionary profiling of the CIN gene family in .
植物中的转化酶基因家族由两个酶亚家族组成,即酸性和中性/碱性转化酶(胞质转化酶,CIN)。两者均可不可逆地将蔗糖裂解为果糖和葡萄糖,被认为在碳代谢和植物生长中发挥关键作用。CIN 广泛存在于植物中,但关于该家族的报道很少。在本文中,采用比较基因组学方法分析了 、 、 、 和 中的 CIN 基因家族。在 5 种 植物中共鉴定出 40 个 CIN,进一步分析了它们的序列特征、系统发育关系、基序组成、基因结构、共线性关系和表达谱。序列分析表明,CIN 在序列长度、基因数量和分子量上具有显著的保守性。在我们的研究中,40 个 CIN 中有 39 个观察到先前验证的四个氨基酸残基(D188、E414、Arg430 和 Ser547),表明它们是深度保守的。CIN 基因家族可分为 α 和 β 组,在我们的系统发育树中,α 进一步细分为 α1 和 α2 亚组。更值得注意的是,每个物种在 α 和 β 组中平均有四个 CIN。通过染色体定位进一步揭示了 CIN 物种间的显著保守性和共线性。基于 分析,每个 α 和 β 组的外显子-内含子结构和保守基序都是一致的。表达分析表明,CIN 在 和 所有测试样本中均持续表达,具有相似的表达谱。此外,在番茄和土豆的 CIN 基因对非生物和生物胁迫以及植物激素的反应中也表现出相似的表达模式。总体而言, 中的 CIN 由一个小而高度保守的基因家族编码,可能反映了其在 中的结构和功能保守性。这些结果为进一步阐述 CIN 基因的功能特征奠定了基础,也为理解 CIN 基因家族在 中的进化特征提供了重要依据。