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sp. nov.,分离自泥炭沼泽森林土壤。

sp. nov., isolated from peat swamp forest soil.

机构信息

Department of Microbiology, Faculty of Science, Kasetsart University, Chatuchak, Bangkok 10900, Thailand.

出版信息

Int J Syst Evol Microbiol. 2020 Mar;70(3):1547-1554. doi: 10.1099/ijsem.0.003933.

Abstract

A novel actinobacterial strain, designated K81G1, was isolated from a soil sample collected in Kantulee peat swamp forest, Surat Thani Province, Thailand, and its taxonomic position was determined using a polyphasic approach. Optimal growth of strain K81G1 occurred at 28-30 °C, at pH 5.0-6.0 and without NaCl. Strain K81G1 had cell-wall chemotype IV (-diaminopimelic acid as the diagnostic diamino acid, and arabinose and galactose as diagnostic sugars) and phospholipid pattern type II, characteristic of the genus . It contained MK-9(H) as the predominant menaquinone, iso-C, C cyclo and C as the major cellular fatty acids, and phospholipids consisting of phosphatidylglycerol, diphosphatidylglycerol, phosphatidylethanolamine, hydroxyphosphatidylethanolamine, phosphatidylinositol and two unidentified phospholipids. Based on 16S rRNA gene sequence similarity and phylogenetic analyses, strain K81G1 was most closely related to TBRC 6029 (97.8 % similarity), JCM 30562 (97.8 %) and DSM 45807 (97.6 %). Strain K81G1 exhibited low average nucleotide identity and digital DNA-DNA hybridization values with TBRC 6029 (76.4 %, 23.0 %), JCM 30562 (77.9 %, 24.6 %) and DSM 45807 (77.8 %, 24.3 %). The DNA G+C content of strain K81G1 was 69.7 mol%. Based on data from this polyphasic study, strain K81G1 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is K81G1 (=TBRC 10047=NBRC 113896).

摘要

一株新的放线菌菌株,命名为 K81G1,从泰国素叻他尼省坎图利泥炭沼泽森林的土壤样本中分离得到,并通过多相方法确定了其分类地位。菌株 K81G1 的最佳生长条件为 28-30°C、pH5.0-6.0 和无 NaCl。菌株 K81G1 的细胞壁化学型为 IV 型(-二氨基庚二酸为诊断性二氨基酸,阿拉伯糖和半乳糖为诊断性糖)和磷脂型 II 型,这是属的特征。它含有 MK-9(H)作为主要的menaquinone,iso-C、C cyclo 和 C 作为主要的细胞脂肪酸,以及由磷脂酰甘油、双磷脂酰甘油、磷脂酰乙醇胺、羟基磷脂酰乙醇胺、磷脂酰肌醇和两种未鉴定的磷脂组成的磷脂。基于 16S rRNA 基因序列相似性和系统发育分析,菌株 K81G1与 TBRC 6029(97.8%相似性)、JCM 30562(97.8%相似性)和 DSM 45807(97.6%相似性)最为密切相关。菌株 K81G1与 TBRC 6029(76.4%,23.0%)、JCM 30562(77.9%,24.6%)和 DSM 45807(77.8%,24.3%)的平均核苷酸同一性和数字 DNA-DNA 杂交值较低。菌株 K81G1 的 DNA G+C 含量为 69.7 mol%。基于多相研究的数据,菌株 K81G1代表属的一个新种,提议命名为 sp. nov.。模式菌株为 K81G1(=TBRC 10047=NBRC 113896)。

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