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高斯电荷方案框架下溶质空穴对溶剂化能及其导数的影响

Effect of the Solute Cavity on the Solvation Energy and its Derivatives within the Framework of the Gaussian Charge Scheme.

作者信息

Garcia-Ratés Miquel, Neese Frank

机构信息

Max-Planck-Institut für Kohlenforschung, Mülheim an der Ruhr, Germany.

出版信息

J Comput Chem. 2020 Apr 5;41(9):922-939. doi: 10.1002/jcc.26139. Epub 2019 Dec 30.

Abstract

The treatment of the solvation charges using Gaussian functions in the polarizable continuum model results in a smooth potential energy surface. These charges are placed on top of the surface of the solute cavity. In this article, we study the effect of the solute cavity (van der Waals-type or solvent-excluded surface-type) using the Gaussian charge scheme within the framework of the conductor-like polarizable continuum model on (a) the accuracy and computational cost of the self-consistent field (SCF) energy and its gradient and on (b) the calculation of free energies of solvation. For that purpose, we have considered a large set of systems ranging from few atoms to more than 200 atoms in different solvents. Our results at the DFT level using the B3LYP functional and the def2-TZVP basis set show that the choice of the solute cavity does neither affect the accuracy nor the cost of calculations for small systems (< 100 atoms). For larger systems, the use of a vdW-type cavity is recommended, as it prevents small oscillations in the gradient (present when using a SES-type cavity), which affect the convergence of the SCF energy gradient. Regarding the free energies of solvation, we consider a solvent-dependent probe sphere to construct the solvent-accessible surface area required to calculate the nonelectrostatic contribution to the free energy of solvation. For this part, our results for a large set of organic molecules in different solvents agree with available experimental data with an accuracy lower than 1 kcal/mol for both polar and nonpolar solvents.

摘要

在可极化连续介质模型中使用高斯函数处理溶剂化电荷会产生一个平滑的势能面。这些电荷放置在溶质腔表面之上。在本文中,我们在类导体可极化连续介质模型的框架内,使用高斯电荷方案研究溶质腔(范德华型或溶剂排除表面型)对以下方面的影响:(a) 自洽场(SCF)能量及其梯度的精度和计算成本,以及 (b) 溶剂化自由能的计算。为此,我们考虑了大量的体系,从几个原子到不同溶剂中超过200个原子的体系。我们使用B3LYP泛函和def2-TZVP基组在DFT水平上的结果表明,对于小体系(<100个原子),溶质腔的选择既不影响计算精度也不影响计算成本。对于较大的体系,建议使用范德华型腔,因为它可以防止梯度出现小的振荡(使用溶剂排除表面型腔时会出现),而这种振荡会影响SCF能量梯度的收敛。关于溶剂化自由能,我们考虑一个与溶剂相关的探针球来构建计算溶剂化自由能的非静电贡献所需的溶剂可及表面积。对于这部分内容,我们对不同溶剂中大量有机分子的结果与现有实验数据相符,对于极性和非极性溶剂,精度均低于1 kcal/mol。

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