• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

一种基于DNA的有限域算术新模型。

A new DNA-based model for finite field arithmetic.

作者信息

Jirón Iván, Soto Susana, Marín Sabrina, Acosta Mauricio, Soto Ismael

机构信息

Departamento de Matemáticas, Universidad Católica del Norte, Antofagasta, Chile.

Centro de biotecnología "Profesor Alberto Ruiz", Universidad Católica del Norte, Antofagasta, Chile.

出版信息

Heliyon. 2019 Dec 11;5(12):e02901. doi: 10.1016/j.heliyon.2019.e02901. eCollection 2019 Dec.

DOI:10.1016/j.heliyon.2019.e02901
PMID:31890936
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6926258/
Abstract

A Galois field with a prime number and is a mathematical structure widely used in Cryptography and Error Correcting Codes Theory. In this paper, we propose a novel DNA-based model for arithmetic over . Our model has three main advantages over other previously described models. First, it has a flexible implementation in the laboratory that allows the realization arithmetic calculations in parallel for , while the tile assembly and the sticker models are limited to . Second, the proposed model is less prone to error, because it is grounded on conventional Polymerase Chain Reaction (PCR) amplification and gel electrophoresis techniques. Hence, the problems associated to models such as tile-assembly and stickers, that arise when using more complex molecular techniques, such as hybridization and denaturation, are avoided. Third, it is simple to implement and requires 50 ng/μL per DNA double fragment used to develop the calculations, since the only feature of interest is the size of the DNA double strand fragments. The efficiency of our model has execution times of order and , for the addition and multiplication over , respectively. Furthermore, this paper provides one of the few experimental evidences of arithmetic calculations for molecular computing and validates the technical applicability of the proposed model to perform arithmetic operations over .

摘要

具有素数的伽罗瓦域是一种在密码学和纠错码理论中广泛使用的数学结构。在本文中,我们提出了一种新颖的基于DNA的用于GF(p)上算术运算的模型。与先前描述的其他模型相比,我们的模型具有三个主要优点。首先,它在实验室中有灵活的实现方式,允许对GF(p)并行实现算术计算,而瓦片组装模型和贴纸模型仅限于GF(2)。其次,所提出的模型不易出错,因为它基于传统的聚合酶链反应(PCR)扩增和凝胶电泳技术。因此,避免了在使用更复杂的分子技术(如杂交和变性)时出现的与瓦片组装和贴纸等模型相关的问题。第三,它易于实现,并且用于进行计算的每个DNA双链片段需要50 ng/μL,因为唯一感兴趣的特征是DNA双链片段的大小。我们模型的效率对于GF(p)上的加法和乘法运算,执行时间分别为O(p)和O(p²)量级。此外,本文提供了为数不多的分子计算算术运算的实验证据之一,并验证了所提出模型在GF(p)上执行算术运算的技术适用性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecab/6926258/8433b84e50d0/gr11.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecab/6926258/76692914f00f/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecab/6926258/24a2d5506e97/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecab/6926258/732d586c6dd4/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecab/6926258/ab24c8da62d9/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecab/6926258/15f3b50b03b1/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecab/6926258/db0e88993052/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecab/6926258/382d22a4e2f4/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecab/6926258/dc957d7581fb/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecab/6926258/3d3df794c0f5/gr9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecab/6926258/8e630cffacc9/gr10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecab/6926258/8433b84e50d0/gr11.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecab/6926258/76692914f00f/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecab/6926258/24a2d5506e97/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecab/6926258/732d586c6dd4/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecab/6926258/ab24c8da62d9/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecab/6926258/15f3b50b03b1/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecab/6926258/db0e88993052/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecab/6926258/382d22a4e2f4/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecab/6926258/dc957d7581fb/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecab/6926258/3d3df794c0f5/gr9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecab/6926258/8e630cffacc9/gr10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecab/6926258/8433b84e50d0/gr11.jpg

相似文献

1
A new DNA-based model for finite field arithmetic.一种基于DNA的有限域算术新模型。
Heliyon. 2019 Dec 11;5(12):e02901. doi: 10.1016/j.heliyon.2019.e02901. eCollection 2019 Dec.
2
Parallel molecular computation of modular-multiplication with two same inputs over finite field GF(2(n)) using self-assembly of DNA tiles.利用DNA瓦片的自组装在有限域GF(2(n))上对两个相同输入进行模乘的并行分子计算。
Comput Biol Chem. 2014 Jun;50:82-7. doi: 10.1016/j.compbiolchem.2014.01.004. Epub 2014 Jan 23.
3
A hardware architecture using finite-field arithmetic for computing maximum-likelihood estimates in emission tomography.一种使用有限域算术进行发射断层成像中最大似然估计计算的硬件架构。
IEEE Trans Med Imaging. 1988;7(4):279-90. doi: 10.1109/42.14510.
4
Exploring the Feasibility of a DNA Computer: Design of an ALU Using Sticker-Based DNA Model.探索DNA计算机的可行性:基于贴纸的DNA模型设计算术逻辑单元
IEEE Trans Nanobioscience. 2017 Sep;16(6):383-399. doi: 10.1109/TNB.2017.2726682. Epub 2017 Jul 13.
5
Demonstration of Arithmetic Calculations by DNA Tile-Based Algorithmic Self-Assembly.基于DNA瓦片的算法自组装实现算术计算的演示。
ACS Nano. 2020 May 26;14(5):5260-5267. doi: 10.1021/acsnano.0c01387. Epub 2020 Mar 16.
6
DNA Arithmetic With Error Correction.带纠错的 DNA 算术。
IEEE Trans Nanobioscience. 2023 Apr;22(2):329-336. doi: 10.1109/TNB.2022.3189833. Epub 2023 Mar 31.
7
Folic acid supplementation and malaria susceptibility and severity among people taking antifolate antimalarial drugs in endemic areas.在流行地区,服用抗叶酸抗疟药物的人群中,叶酸补充剂与疟疾易感性和严重程度的关系。
Cochrane Database Syst Rev. 2022 Feb 1;2(2022):CD014217. doi: 10.1002/14651858.CD014217.
8
VLSI architectures for computing multiplications and inverses in GF(2m).
IEEE Trans Comput. 1985 Aug;C-34(8):709-17. doi: 10.1109/tc.1985.1676616.
9
Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).大分子拥挤现象:化学与物理邂逅生物学(瑞士阿斯科纳,2012年6月10日至14日)
Phys Biol. 2013 Aug;10(4):040301. doi: 10.1088/1478-3975/10/4/040301. Epub 2013 Aug 2.
10
Low-rank parity-check codes over Galois rings.伽罗瓦环上的低秩奇偶校验码。
Des Codes Cryptogr. 2021;89(2):351-386. doi: 10.1007/s10623-020-00825-9. Epub 2020 Dec 13.

引用本文的文献

1
A New COVID-19 Detection Method Based on CSK/QAM Visible Light Communication and Machine Learning.一种基于 CSK/QAM 可见光通信和机器学习的新型 COVID-19 检测方法。
Sensors (Basel). 2023 Jan 30;23(3):1533. doi: 10.3390/s23031533.

本文引用的文献

1
Diverse and robust molecular algorithms using reprogrammable DNA self-assembly.利用可编程 DNA 自组装技术实现多样化和稳健的分子算法。
Nature. 2019 Mar;567(7748):366-372. doi: 10.1038/s41586-019-1014-9. Epub 2019 Mar 20.
2
Computing exponentially faster: implementing a non-deterministic universal Turing machine using DNA.计算速度呈指数级提升:利用DNA实现非确定性通用图灵机
J R Soc Interface. 2017 Mar;14(128). doi: 10.1098/rsif.2016.0990.
3
Automatic DNA Diagnosis for 1D Gel Electrophoresis Images using Bio-image Processing Technique.
利用生物图像处理技术对一维凝胶电泳图像进行自动DNA诊断。
BMC Genomics. 2015;16 Suppl 12(Suppl 12):S15. doi: 10.1186/1471-2164-16-S12-S15. Epub 2015 Dec 9.
4
Towards practical, high-capacity, low-maintenance information storage in synthesized DNA.在合成 DNA 中实现实用、大容量、低维护的信息存储。
Nature. 2013 Feb 7;494(7435):77-80. doi: 10.1038/nature11875. Epub 2013 Jan 23.
5
Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction.Primer-BLAST:一种用于设计聚合酶链反应(PCR)目标特异性引物的工具。
BMC Bioinformatics. 2012 Jun 18;13:134. doi: 10.1186/1471-2105-13-134.
6
High resolution DNA separations using microchip electrophoresis.使用微芯片电泳进行高分辨率DNA分离。
J Sep Sci. 2007 Jul;30(11):1714-28. doi: 10.1002/jssc.200700150.
7
Folding DNA to create nanoscale shapes and patterns.折叠DNA以创造纳米级形状和图案。
Nature. 2006 Mar 16;440(7082):297-302. doi: 10.1038/nature04586.
8
Fast parallel molecular algorithms for DNA-based computation: factoring integers.用于基于DNA计算的快速并行分子算法:整数分解
IEEE Trans Nanobioscience. 2005 Jun;4(2):149-63. doi: 10.1109/tnb.2005.850474.
9
Algorithmic self-assembly of DNA Sierpinski triangles.DNA 谢尔宾斯基三角形的算法自组装
PLoS Biol. 2004 Dec;2(12):e424. doi: 10.1371/journal.pbio.0020424. Epub 2004 Dec 7.
10
Solution of a 20-variable 3-SAT problem on a DNA computer.DNA计算机上一个20变量3-SAT问题的解决方案。
Science. 2002 Apr 19;296(5567):499-502. doi: 10.1126/science.1069528. Epub 2002 Mar 14.