用于快速准确诊断细菌性脑膜炎的脑脊液16S rRNA基因的MinION测序 - Suppr

Cerebrospinal fluid MinION sequencing of 16S rRNA gene for rapid and accurate diagnosis of bacterial meningitis.

作者信息

Hong Nguyen Thi Thu, Nghia Ho Dang Trung, Thanh Tran Tan, Lan Nguyen Phu Huong, Ny Nguyen Thi Han, Ngoc Nghiem My, Hang Vu Thi Ty, Chau Le Thi My, Quynh Van Xuan, Diem Le Thi, Hanh Bui Thi Bich, Hanh Nguyen Ho Hong, Duc Du Trong, Man Dinh Nguyen Huy, Campbell James, Oanh Pham Kieu Nguyet, Day Jeremy, Phu Nguyen Hoan, Chau Nguyen Van Vinh, Thwaites Guy, Tan Le Van

机构信息

Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.

Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam; Pham Ngoc Thach University of Medicine, Ho Chi Minh City, Vietnam; Hospital for Tropical Diseases, Ho Chi Minh City, Vietnam.

出版信息

J Infect. 2020 Apr;80(4):469-496. doi: 10.1016/j.jinf.2019.12.011. Epub 2019 Dec 28.

DOI:10.1016/j.jinf.2019.12.011

PMID:31891725

原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7113840/

Abstract

摘要

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e16/7113840/1c7b9aa459e8/gr1.jpg

相似文献

Cerebrospinal fluid MinION sequencing of 16S rRNA gene for rapid and accurate diagnosis of bacterial meningitis.用于快速准确诊断细菌性脑膜炎的脑脊液16S rRNA基因的MinION测序

J Infect. 2020 Apr;80(4):469-496. doi: 10.1016/j.jinf.2019.12.011. Epub 2019 Dec 28.

Rapid diagnosis of bacterial meningitis by nanopore 16S amplicon sequencing: A pilot study.基于纳米孔 16S 扩增子测序的细菌性脑膜炎快速诊断：一项初步研究。

Int J Med Microbiol. 2019 Sep;309(6):151338. doi: 10.1016/j.ijmm.2019.151338. Epub 2019 Aug 12.

A Refined, Controlled 16S rRNA Gene Sequencing Approach Reveals Limited Detection of Cerebrospinal Fluid Microbiota in Children with Bacterial Meningitis.一种精细化、可控的 16S rRNA 基因测序方法揭示了细菌性脑膜炎患儿脑脊液微生物组的有限检出率。

Microbiol Spectr. 2023 Jun 15;11(3):e0036123. doi: 10.1128/spectrum.00361-23. Epub 2023 May 4.

High-throughput sequencing of 16S rDNA amplicons characterizes bacterial composition in cerebrospinal fluid samples from patients with purulent meningitis.16S rDNA扩增子的高通量测序可表征化脓性脑膜炎患者脑脊液样本中的细菌组成。

Drug Des Devel Ther. 2015 Aug 7;9:4417-29. doi: 10.2147/DDDT.S82728. eCollection 2015.

Campylobacter fetus meningitis confirmed by a 16S rRNA gene analysis using the MinION nanopore sequencer, South Korea, 2016.2016年，韩国通过使用MinION纳米孔测序仪进行16S rRNA基因分析确诊胎儿弯曲菌脑膜炎。

Emerg Microbes Infect. 2017 Nov 1;6(11):e94. doi: 10.1038/emi.2017.81.

Evaluation of the MicroSeq 500 16S rDNA-based gene sequencing for the diagnosis of culture-negative bacterial meningitis.基于MicroSeq 500 16S核糖体DNA的基因测序在诊断培养阴性细菌性脑膜炎中的应用评估。

New Microbiol. 2008 Jul;31(3):343-9.

Nanopore 16S sequencing enhances the detection of bacterial meningitis after neurosurgery.纳米孔 16S 测序增强神经外科术后细菌性脑膜炎的检测。

Ann Clin Transl Neurol. 2022 Mar;9(3):312-325. doi: 10.1002/acn3.51517. Epub 2022 Feb 6.

Diagnosis of pathogens causing bacterial meningitis using Nanopore sequencing in a resource-limited setting.在资源有限的情况下使用纳米孔测序诊断细菌性脑膜炎的病原体。

Ann Clin Microbiol Antimicrob. 2022 Sep 5;21(1):39. doi: 10.1186/s12941-022-00530-6.

16S rRNA nanopore sequencing for the diagnosis of ocular infection: a feasibility study.16S rRNA 纳米孔测序在眼内感染诊断中的应用：一项可行性研究。

BMJ Open Ophthalmol. 2022 May;7(1). doi: 10.1136/bmjophth-2021-000910. Epub 2022 May 24.

Use of 16S rRNA sequencing for identification of Actinobacillus ureae isolated from a cerebrospinal fluid sample.使用16S rRNA测序法鉴定从脑脊液样本中分离出的脲放线杆菌。

J Clin Microbiol. 2002 Feb;40(2):666-8. doi: 10.1128/JCM.40.2.666-668.2002.

引用本文的文献

Applying nanopore sequencing in the etiological diagnosis of bloodstream infection.纳米孔测序在血流感染病因诊断中的应用。

Front Microbiol. 2025 Feb 13;16:1554965. doi: 10.3389/fmicb.2025.1554965. eCollection 2025.

Clinical application and evaluation of metagenomic next-generation sequencing in pathogen detection for suspected central nervous system infections.宏基因组下一代测序在疑似中枢神经系统感染病原体检测中的临床应用和评估。

Sci Rep. 2024 Jul 23;14(1):16961. doi: 10.1038/s41598-024-68034-1.

The newest Oxford Nanopore R10.4.1 full-length 16S rRNA sequencing enables the accurate resolution of species-level microbial community profiling.最新的牛津纳米孔 R10.4.1 全长 16S rRNA 测序可实现精确解析物种水平的微生物群落组成。

Appl Environ Microbiol. 2023 Oct 31;89(10):e0060523. doi: 10.1128/aem.00605-23. Epub 2023 Oct 6.

Predicting β-lactam susceptibility from the genome of and other mitis group streptococci.从口腔链球菌及其他缓症链球菌基因组预测β-内酰胺敏感性。

Front Microbiol. 2023 Mar 2;14:1120023. doi: 10.3389/fmicb.2023.1120023. eCollection 2023.

The application of targeted nanopore sequencing for the identification of pathogens and resistance genes in lower respiratory tract infections.靶向纳米孔测序在鉴定下呼吸道感染病原体及耐药基因中的应用。

Front Microbiol. 2022 Dec 22;13:1065159. doi: 10.3389/fmicb.2022.1065159. eCollection 2022.

Diagnosis of pathogens causing bacterial meningitis using Nanopore sequencing in a resource-limited setting.在资源有限的情况下使用纳米孔测序诊断细菌性脑膜炎的病原体。

Ann Clin Microbiol Antimicrob. 2022 Sep 5;21(1):39. doi: 10.1186/s12941-022-00530-6.

Improving the Diagnosis of Bacterial Infections: Evaluation of 16S rRNA Nanopore Metagenomics in Culture-Negative Samples.改善细菌感染的诊断：对培养阴性样本中16S rRNA纳米孔宏基因组学的评估

Front Microbiol. 2022 Jul 14;13:943441. doi: 10.3389/fmicb.2022.943441. eCollection 2022.

Nanopore 16S sequencing enhances the detection of bacterial meningitis after neurosurgery.纳米孔 16S 测序增强神经外科术后细菌性脑膜炎的检测。

Ann Clin Transl Neurol. 2022 Mar;9(3):312-325. doi: 10.1002/acn3.51517. Epub 2022 Feb 6.

Nanopore sequencing of cerebrospinal fluid of three patients with cryptococcal meningitis.对 3 例隐球菌性脑膜炎患者的脑脊液进行纳米孔测序。

Eur J Med Res. 2022 Jan 3;27(1):1. doi: 10.1186/s40001-021-00625-4.

Toward Establishing Integrated, Comprehensive, and Sustainable Meningitis Surveillance in Africa to Better Inform Vaccination Strategies.建立综合、全面和可持续的非洲脑膜炎监测系统，以更好地为疫苗接种策略提供信息。

J Infect Dis. 2021 Sep 1;224(12 Suppl 2):S299-S306. doi: 10.1093/infdis/jiab268.

本文引用的文献

Rapid diagnosis of bacterial meningitis by nanopore 16S amplicon sequencing: A pilot study.基于纳米孔 16S 扩增子测序的细菌性脑膜炎快速诊断：一项初步研究。

Int J Med Microbiol. 2019 Sep;309(6):151338. doi: 10.1016/j.ijmm.2019.151338. Epub 2019 Aug 12.

Rapid bacterial identification by direct PCR amplification of 16S rRNA genes using the MinION™ nanopore sequencer.利用 MinION™ 纳米孔测序仪直接对 16S rRNA 基因进行 PCR 扩增进行快速细菌鉴定。

FEBS Open Bio. 2019 Jan 29;9(3):548-557. doi: 10.1002/2211-5463.12590. eCollection 2019 Mar.

Next-generation sequencing combined with routine methods to detect the pathogens of encephalitis/meningitis from a Chinese tertiary pediatric neurology center.下一代测序结合常规方法检测中国一家三级儿科神经科中心的脑炎/脑膜炎病原体。

J Infect. 2019 May;78(5):409-421. doi: 10.1016/j.jinf.2019.02.011. Epub 2019 Feb 22.

Epidemiology of Invasive Group B Streptococcal Infections Among Nonpregnant Adults in the United States, 2008-2016.美国非孕妇成人侵袭性 B 群链球菌感染的流行病学。2008-2016 年。

JAMA Intern Med. 2019 Apr 1;179(4):479-488. doi: 10.1001/jamainternmed.2018.7269.

Detection of pediatric bacterial meningitis pathogens from cerebrospinal fluid by next-generation sequencing technology.利用下一代测序技术从脑脊液中检测儿童细菌性脑膜炎病原体

J Infect. 2019 Apr;78(4):323-337. doi: 10.1016/j.jinf.2018.12.001. Epub 2018 Dec 12.

Diagnosis of Haemophilus influenzae Pneumonia by Nanopore 16S Amplicon Sequencing of Sputum.基于纳米孔 16S 扩增子测序技术对痰液进行分析诊断流感嗜血杆菌肺炎

Emerg Infect Dis. 2018 Oct;24(10):1944-1946. doi: 10.3201/eid2410.180234. Epub 2018 Oct 17.

Emerg Microbes Infect. 2017 Nov 1;6(11):e94. doi: 10.1038/emi.2017.81.

Community-acquired bacterial meningitis.社区获得性细菌性脑膜炎

Curr Opin Infect Dis. 2017 Feb;30(1):135-141. doi: 10.1097/QCO.0000000000000335.

Bacterial diversity assessment in Antarctic terrestrial and aquatic microbial mats: a comparison between bidirectional pyrosequencing and cultivation.南极陆地和水生微生物垫中的细菌多样性评估：双向焦磷酸测序与培养法的比较

PLoS One. 2014 Jun 2;9(6):e97564. doi: 10.1371/journal.pone.0097564. eCollection 2014.

文献检索

告别复杂PubMed语法，用中文像聊天一样搜索，搜遍4000万医学文献。AI智能推荐，让科研检索更轻松。

立即免费搜索

文件翻译

保留排版，准确专业，支持PDF/Word/PPT等文件格式，支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述，25分钟生成高质量综述，智能提取关键信息，辅助科研写作。

立即免费体验

Cerebrospinal fluid MinION sequencing of 16S rRNA gene for rapid and accurate diagnosis of bacterial meningitis.

作者信息

机构信息

出版信息

相似文献

引用本文的文献

本文引用的文献

文献检索

文件翻译

深度研究

Suppr 超能文献

相似文献

引用本文的文献

本文引用的文献