用于快速准确诊断细菌性脑膜炎的脑脊液16S rRNA基因的MinION测序 - Suppr

Cerebrospinal fluid MinION sequencing of 16S rRNA gene for rapid and accurate diagnosis of bacterial meningitis.

作者信息

Hong Nguyen Thi Thu, Nghia Ho Dang Trung, Thanh Tran Tan, Lan Nguyen Phu Huong, Ny Nguyen Thi Han, Ngoc Nghiem My, Hang Vu Thi Ty, Chau Le Thi My, Quynh Van Xuan, Diem Le Thi, Hanh Bui Thi Bich, Hanh Nguyen Ho Hong, Duc Du Trong, Man Dinh Nguyen Huy, Campbell James, Oanh Pham Kieu Nguyet, Day Jeremy, Phu Nguyen Hoan, Chau Nguyen Van Vinh, Thwaites Guy, Tan Le Van

机构信息

Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.

Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam; Pham Ngoc Thach University of Medicine, Ho Chi Minh City, Vietnam; Hospital for Tropical Diseases, Ho Chi Minh City, Vietnam.

出版信息

J Infect. 2020 Apr;80(4):469-496. doi: 10.1016/j.jinf.2019.12.011. Epub 2019 Dec 28.

DOI:10.1016/j.jinf.2019.12.011

PMID:31891725

原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7113840/

Abstract

摘要

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e16/7113840/1c7b9aa459e8/gr1.jpg

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本文引用的文献

Rapid diagnosis of bacterial meningitis by nanopore 16S amplicon sequencing: A pilot study.

Int J Med Microbiol. 2019 Sep;309(6):151338. doi: 10.1016/j.ijmm.2019.151338. Epub 2019 Aug 12.

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FEBS Open Bio. 2019 Jan 29;9(3):548-557. doi: 10.1002/2211-5463.12590. eCollection 2019 Mar.

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J Infect. 2019 May;78(5):409-421. doi: 10.1016/j.jinf.2019.02.011. Epub 2019 Feb 22.

Epidemiology of Invasive Group B Streptococcal Infections Among Nonpregnant Adults in the United States, 2008-2016.

JAMA Intern Med. 2019 Apr 1;179(4):479-488. doi: 10.1001/jamainternmed.2018.7269.

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J Infect. 2019 Apr;78(4):323-337. doi: 10.1016/j.jinf.2018.12.001. Epub 2018 Dec 12.

Diagnosis of Haemophilus influenzae Pneumonia by Nanopore 16S Amplicon Sequencing of Sputum.

Emerg Infect Dis. 2018 Oct;24(10):1944-1946. doi: 10.3201/eid2410.180234. Epub 2018 Oct 17.

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Emerg Microbes Infect. 2017 Nov 1;6(11):e94. doi: 10.1038/emi.2017.81.

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Curr Opin Infect Dis. 2017 Feb;30(1):135-141. doi: 10.1097/QCO.0000000000000335.

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PLoS One. 2014 Jun 2;9(6):e97564. doi: 10.1371/journal.pone.0097564. eCollection 2014.

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Cerebrospinal fluid MinION sequencing of 16S rRNA gene for rapid and accurate diagnosis of bacterial meningitis.

作者信息

机构信息

Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.

Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam; Pham Ngoc Thach University of Medicine, Ho Chi Minh City, Vietnam; Hospital for Tropical Diseases, Ho Chi Minh City, Vietnam.

出版信息

J Infect. 2020 Apr;80(4):469-496. doi: 10.1016/j.jinf.2019.12.011. Epub 2019 Dec 28.

DOI:10.1016/j.jinf.2019.12.011

PMID:31891725

原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7113840/

Abstract

摘要

相似文献

Cerebrospinal fluid MinION sequencing of 16S rRNA gene for rapid and accurate diagnosis of bacterial meningitis.

J Infect. 2020 Apr;80(4):469-496. doi: 10.1016/j.jinf.2019.12.011. Epub 2019 Dec 28.

Rapid diagnosis of bacterial meningitis by nanopore 16S amplicon sequencing: A pilot study.

Int J Med Microbiol. 2019 Sep;309(6):151338. doi: 10.1016/j.ijmm.2019.151338. Epub 2019 Aug 12.

A Refined, Controlled 16S rRNA Gene Sequencing Approach Reveals Limited Detection of Cerebrospinal Fluid Microbiota in Children with Bacterial Meningitis.

Microbiol Spectr. 2023 Jun 15;11(3):e0036123. doi: 10.1128/spectrum.00361-23. Epub 2023 May 4.

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Drug Des Devel Ther. 2015 Aug 7;9:4417-29. doi: 10.2147/DDDT.S82728. eCollection 2015.

Campylobacter fetus meningitis confirmed by a 16S rRNA gene analysis using the MinION nanopore sequencer, South Korea, 2016.

Emerg Microbes Infect. 2017 Nov 1;6(11):e94. doi: 10.1038/emi.2017.81.

Evaluation of the MicroSeq 500 16S rDNA-based gene sequencing for the diagnosis of culture-negative bacterial meningitis.

New Microbiol. 2008 Jul;31(3):343-9.

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Ann Clin Transl Neurol. 2022 Mar;9(3):312-325. doi: 10.1002/acn3.51517. Epub 2022 Feb 6.

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Ann Clin Microbiol Antimicrob. 2022 Sep 5;21(1):39. doi: 10.1186/s12941-022-00530-6.

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BMJ Open Ophthalmol. 2022 May;7(1). doi: 10.1136/bmjophth-2021-000910. Epub 2022 May 24.

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J Clin Microbiol. 2002 Feb;40(2):666-8. doi: 10.1128/JCM.40.2.666-668.2002.

引用本文的文献

Applying nanopore sequencing in the etiological diagnosis of bloodstream infection.

Front Microbiol. 2025 Feb 13;16:1554965. doi: 10.3389/fmicb.2025.1554965. eCollection 2025.

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Sci Rep. 2024 Jul 23;14(1):16961. doi: 10.1038/s41598-024-68034-1.

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Appl Environ Microbiol. 2023 Oct 31;89(10):e0060523. doi: 10.1128/aem.00605-23. Epub 2023 Oct 6.

Predicting β-lactam susceptibility from the genome of and other mitis group streptococci.

Front Microbiol. 2023 Mar 2;14:1120023. doi: 10.3389/fmicb.2023.1120023. eCollection 2023.

The application of targeted nanopore sequencing for the identification of pathogens and resistance genes in lower respiratory tract infections.

Front Microbiol. 2022 Dec 22;13:1065159. doi: 10.3389/fmicb.2022.1065159. eCollection 2022.

Diagnosis of pathogens causing bacterial meningitis using Nanopore sequencing in a resource-limited setting.

Ann Clin Microbiol Antimicrob. 2022 Sep 5;21(1):39. doi: 10.1186/s12941-022-00530-6.

Improving the Diagnosis of Bacterial Infections: Evaluation of 16S rRNA Nanopore Metagenomics in Culture-Negative Samples.

Front Microbiol. 2022 Jul 14;13:943441. doi: 10.3389/fmicb.2022.943441. eCollection 2022.

Nanopore 16S sequencing enhances the detection of bacterial meningitis after neurosurgery.

Ann Clin Transl Neurol. 2022 Mar;9(3):312-325. doi: 10.1002/acn3.51517. Epub 2022 Feb 6.

Nanopore sequencing of cerebrospinal fluid of three patients with cryptococcal meningitis.

Eur J Med Res. 2022 Jan 3;27(1):1. doi: 10.1186/s40001-021-00625-4.

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J Infect Dis. 2021 Sep 1;224(12 Suppl 2):S299-S306. doi: 10.1093/infdis/jiab268.

本文引用的文献

Rapid diagnosis of bacterial meningitis by nanopore 16S amplicon sequencing: A pilot study.

Int J Med Microbiol. 2019 Sep;309(6):151338. doi: 10.1016/j.ijmm.2019.151338. Epub 2019 Aug 12.

Rapid bacterial identification by direct PCR amplification of 16S rRNA genes using the MinION™ nanopore sequencer.

FEBS Open Bio. 2019 Jan 29;9(3):548-557. doi: 10.1002/2211-5463.12590. eCollection 2019 Mar.

Next-generation sequencing combined with routine methods to detect the pathogens of encephalitis/meningitis from a Chinese tertiary pediatric neurology center.

J Infect. 2019 May;78(5):409-421. doi: 10.1016/j.jinf.2019.02.011. Epub 2019 Feb 22.

Epidemiology of Invasive Group B Streptococcal Infections Among Nonpregnant Adults in the United States, 2008-2016.

JAMA Intern Med. 2019 Apr 1;179(4):479-488. doi: 10.1001/jamainternmed.2018.7269.

Detection of pediatric bacterial meningitis pathogens from cerebrospinal fluid by next-generation sequencing technology.

J Infect. 2019 Apr;78(4):323-337. doi: 10.1016/j.jinf.2018.12.001. Epub 2018 Dec 12.

Diagnosis of Haemophilus influenzae Pneumonia by Nanopore 16S Amplicon Sequencing of Sputum.

Emerg Infect Dis. 2018 Oct;24(10):1944-1946. doi: 10.3201/eid2410.180234. Epub 2018 Oct 17.

Campylobacter fetus meningitis confirmed by a 16S rRNA gene analysis using the MinION nanopore sequencer, South Korea, 2016.

Emerg Microbes Infect. 2017 Nov 1;6(11):e94. doi: 10.1038/emi.2017.81.

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Curr Opin Infect Dis. 2017 Feb;30(1):135-141. doi: 10.1097/QCO.0000000000000335.

Bacterial diversity assessment in Antarctic terrestrial and aquatic microbial mats: a comparison between bidirectional pyrosequencing and cultivation.

PLoS One. 2014 Jun 2;9(6):e97564. doi: 10.1371/journal.pone.0097564. eCollection 2014.

Cerebrospinal fluid MinION sequencing of 16S rRNA gene for rapid and accurate diagnosis of bacterial meningitis.

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Cerebrospinal fluid MinION sequencing of 16S rRNA gene for rapid and accurate diagnosis of bacterial meningitis.

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