Rensink Stephanie, Wiegand Sandra, Kallscheuer Nicolai, Rast Patrick, Peeters Stijn H, Heuer Anja, Boedeker Christian, Jetten Mike S M, Rohde Manfred, Jogler Mareike, Jogler Christian
Department of Microbiology, Radboud University, Nijmegen, The Netherlands.
Leibniz Institute DSMZ, Brunswick, Germany.
Antonie Van Leeuwenhoek. 2020 Dec;113(12):1823-1837. doi: 10.1007/s10482-019-01378-1. Epub 2020 Jan 1.
Planctomycetes are part of the PVC superphylum together with Verrucomicrobia, Chlamydiae and others. They are budding bacteria with very distinctive characteristics, such as a remarkable morphology and cell biology. Planctomycetes can be found in almost all habitats, and seem to have a preference for marine biotic and abiotic surfaces, on which they frequently occur in biofilm-forming communities. To extend the number of axenic cultures of planctomycetal strains, we isolated Pan97 from a biofilm in a volcanic site close to the Italian island Panarea in the Thyrrhenian Sea. The physiology, genome and morphology of the novel strain were characterised revealing typical planctomycetal characteristics, such as, division by polar budding and presence of crateriform structures. The strain shows pear-shaped cells of 1.5 ± 0.3 µm × 0.8 ± 0.2 µm and forms white- to cream-coloured colonies on solid medium. Strain Pan97 is mesophilic and neutrophilic, since growth was observed at a pH range of 5.5-9.5 with optimal growth at pH 7.0 and at a temperature range of 15-40 °C with a maximal growth rate at 36 °C. Pan97 has a genome size of 6,496,182 bp with a G + C content of 56.2%. 5264 protein-coding genes were identified, of which 2141 genes (41%) encode hypothetical proteins. Based on the phylogenetic analysis, we suggest that Pan97 (DSM 101992 = LMG 29460) represents a novel species of a novel genus within the family Planctomycetaceae, for which we propose the name Bremerella gen. nov., with strain Pan97 classified as Bremerella volcania sp. nov. Based on our analysis, we also propose the reclassification of Blastopirellula cremea Lee et al. 2013 as Bremerella cremea comb. nov., as this species is considered to be the type species of the novel genus Bremerella.
浮霉菌门与疣微菌门、衣原体等一起属于PVC超门。它们是具有非常独特特征的出芽细菌,例如显著的形态学和细胞生物学特征。浮霉菌门几乎存在于所有栖息地,似乎对海洋生物和非生物表面有偏好,它们经常在形成生物膜的群落中出现在这些表面上。为了增加浮霉菌株的纯培养物数量,我们从第勒尼安海靠近意大利潘泰莱里亚岛的一个火山地点的生物膜中分离出了Pan97。对该新菌株的生理学、基因组和形态进行了表征,揭示了典型的浮霉菌特征,例如通过极性出芽进行分裂以及存在火山口状结构。该菌株显示出梨形细胞,大小为1.5±0.3 µm×0.8±0.2 µm,并在固体培养基上形成白色至奶油色菌落。菌株Pan97是嗜温嗜中性的,因为在pH 5.5 - 9.5范围内观察到生长,最适生长pH为7.0,在温度范围15 - 40°C内生长,最大生长速率在36°C。Pan97的基因组大小为6,496,182 bp,G + C含量为56.2%。鉴定出5264个蛋白质编码基因,其中2141个基因(41%)编码假设蛋白。基于系统发育分析,我们认为Pan97(DSM 101992 = LMG 29460)代表浮霉菌科内一个新属的一个新物种,我们为此提议命名为Bremerella gen. nov.,菌株Pan97分类为Bremerella volcania sp. nov.。基于我们的分析,我们还提议将Blastopirellula cremea Lee等人2013年的分类重新归类为Bremerella cremea comb. nov.,因为该物种被认为是新属Bremerella的模式种。