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Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.全细菌生物信息学数据库与分析资源中心PATRIC的改进。
Nucleic Acids Res. 2017 Jan 4;45(D1):D535-D542. doi: 10.1093/nar/gkw1017. Epub 2016 Nov 29.
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NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
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JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison.JSpeciesWS:一个基于成对基因组比较进行原核生物物种界定的网络服务器。
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RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.RASTtk:一种用于构建定制注释管道和批量注释基因组的RAST算法的模块化可扩展实现。
Sci Rep. 2015 Feb 10;5:8365. doi: 10.1038/srep08365.
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The carbohydrate-active enzymes database (CAZy) in 2013.2013 版碳水化合物活性酶数据库(CAZy)。
Nucleic Acids Res. 2014 Jan;42(Database issue):D490-5. doi: 10.1093/nar/gkt1178. Epub 2013 Nov 21.
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
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从厌氧消化和生物甲烷化过程中分离出的新种的全基因组序列。

Complete Genome Sequence of a New sp. Isolated from Anaerobic Digestion and Biomethanation.

作者信息

Hahnke Sarah, Abendroth Christian, Pascual Javier, Langer Thomas, Ramm Patrice, Klocke Michael, Luschnig Olaf, Porcar Manuel

机构信息

Leibniz Institute for Agricultural Engineering and Bioeconomy, Bioengineering, Potsdam, Germany.

University of Oldenburg, Department of Human Medicine, Oldenburg, Germany.

出版信息

Microbiol Resour Announc. 2020 Jan 16;9(3):e01472-19. doi: 10.1128/MRA.01472-19.

DOI:10.1128/MRA.01472-19
PMID:31948972
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6965590/
Abstract

Here, we present the genome sequence and annotation of the bacterial strain HV4-5-A1G, a potentially new species. Based on its genomic data, this strain may act as a keystone microorganism in the hydrolysis of complex polymers, as well as in the different acidogenesis and acetogenesis steps during anaerobic digestion.

摘要

在此,我们展示了细菌菌株HV4-5-A1G的基因组序列和注释,该菌株可能是一个新物种。基于其基因组数据,该菌株可能在复杂聚合物的水解以及厌氧消化过程中的不同产酸和产乙酸步骤中充当关键微生物。