Applied Genetics Group, National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD, 20899-8314.
ANDE Corporation, 266 Second Avenue, Waltham, MA, 02451.
J Forensic Sci. 2020 May;65(3):953-959. doi: 10.1111/1556-4029.14267. Epub 2020 Jan 27.
Three commercially available integrated rapid DNA instruments were tested as a part of a rapid DNA maturity assessment in July of 2018. The assessment was conducted with sets of blinded single-source reference samples provided to participants for testing on the individual rapid platforms within their laboratories. The data were returned to the National Institute of Standards and Technology (NIST) for review and analysis. Both FBI-defined automated review (Rapid DNA Analysis) and manual review (Modified Rapid DNA Analysis) of the datasets were conducted to assess the success of genotyping the 20 Combined DNA Index System (CODIS) core STR loci and full profiles generated by the instruments. Genotype results from the multiple platforms, participating laboratories, and STR typing chemistries were combined into a single analysis. The Rapid DNA Analysis resulted in a success rate of 80% for full profiles (85% for the 20 CODIS core loci) with automated analysis. Modified Rapid DNA Analysis resulted in a success rate of 90% for both the CODIS 20 core loci and full profiles (all attempted loci per chemistry). An analysis of the peak height ratios demonstrated that 95% of all heterozygous alleles were above 59% heterozygote balance. For base-pair sizing precision, the precision was below the standard 0.5 bp deviation for both the ANDE 6C System and the RapidHIT 200.
三种市售的集成快速 DNA 仪器在 2018 年 7 月进行了快速 DNA 成熟度评估的一部分。评估是使用一组盲单源参考样本进行的,这些样本提供给参与者在他们实验室的各个快速平台上进行测试。数据被送回国家标准与技术研究院 (NIST) 进行审查和分析。对数据集进行了 FBI 定义的自动审查 (快速 DNA 分析) 和手动审查 (改良快速 DNA 分析),以评估对 20 个联合 DNA 索引系统 (CODIS) 核心 STR 基因座和仪器生成的完整图谱进行基因分型的成功情况。来自多个平台、参与实验室和 STR 分型化学物质的基因型结果被组合到一个单一的分析中。快速 DNA 分析的自动分析结果显示,完整图谱的成功率为 80%(20 个 CODIS 核心基因座的成功率为 85%)。改良快速 DNA 分析的成功率为 CODIS 20 个核心基因座和完整图谱的成功率均为 90%(每种化学物质都尝试了所有的基因座)。对峰高比的分析表明,所有杂合子等位基因的 95%都高于 59%的杂合子平衡。对于碱基对大小精度,ANDE 6C 系统和 RapidHIT 200 的精度都低于标准的 0.5 bp 偏差。