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雪露西亚菌新种和博克氏雪露西亚菌新种,从德国新鲜农产品中分离得到,以及将 2003 年 Ajithkumar 等人分类的粘质沙雷氏菌亚种 sakuensis 归为粘质沙雷氏菌亚种 marcescens 的后同位异名。

Serratia nevei sp. nov. and Serratia bockelmannii sp. nov., isolated from fresh produce in Germany and reclassification of Serratia marcescens subsp. sakuensis Ajithkumar et al. 2003 as a later heterotypic synonym of Serratia marcescens subsp. marcescens.

机构信息

Department of Microbiology and Biotechnology, Max Rubner-Institut, Federal Research Institute of Food and Nutrition, Hermann-Weigmann-Straße 1, 24103 Kiel, Germany.

Division of Microbiology, National Institute of Food and Drug Safety Evaluation, Ministry of Food and Drug Safety, 187 Osongsaengmyeong 2-ro, Osong, Cheongju, Chungbuk, 28159, Republic of Korea.

出版信息

Syst Appl Microbiol. 2020 Mar;43(2):126055. doi: 10.1016/j.syapm.2020.126055. Epub 2020 Jan 22.

Abstract

Fifteen enterobacterial strains were isolated from fresh produce. The 16S rRNA gene sequences indicated that these belong to Serratia, with twelve strains showing 99.57%-99.93% and three strains showing 99.86-100% 16S rRNA gene sequence similarity with Serratia marcescens and Serratia nematodiphila as nearest neighbors, respectively. Further comparative multi locus sequence analyses, as well as phylogenomic comparisons, revealed that 6 of the 15 strains were well-separated from their nearest neighbors and formed two clearly distinct taxa. Strains S2, S9, S10 and S15 were urease-positive, while strains S3 and S13 were urease-negative. Average nucleotide identity and digital DNA-DNA hybridization comparisons of representative strains S3 and S15 with type strains of S. marcescens, S. nematodiphila and S. ureilytica indicated that these shared less than 96% and 70% homology, respectively. Major fatty acids of strains S3 and S15 included C16:0, C16:1 ω7c/C16:1 ω6c, C17:0 Cyclo and C18:1 ω6c /C18:1 ω7c. The mol% G+C of genomic DNA of strain S15 was 59.49% and of strain S3 was 59.04. These results support the description of two novel species, Serratia nevei and Serratia bockelmannii, with strains S15 (=LMG 31536 =DSM 110085) and S3 (=LMG 31535 =DSM 110152) as type strains, respectively. Although Serratia marcescens subsp. sakuensis was previously described to form spores, spores could not be determined in this study. As spore formation was the only differential characteristic of this subspecies, S. marcescens subsp. sakuensis is a later heterotypic synonym of Serratia marcescens.

摘要

从新鲜农产品中分离出 15 株肠杆菌。16S rRNA 基因序列表明,这些菌属于沙雷氏菌属,其中 12 株与粘质沙雷氏菌和 nematodiphila 沙雷氏菌的 16S rRNA 基因序列相似性为 99.57%-99.93%,3 株为 99.86-100%。进一步的比较多位点序列分析和系统基因组比较表明,这 15 株菌中的 6 株与其最近的亲缘关系较远,形成了两个明显不同的分类群。菌株 S2、S9、S10 和 S15 为脲酶阳性,而菌株 S3 和 S13 为脲酶阴性。代表菌株 S3 和 S15 与粘质沙雷氏菌、 nematodiphila 沙雷氏菌和 ureilytica 沙雷氏菌的模式株的平均核苷酸同一性和数字 DNA-DNA 杂交比较表明,它们的同源性均小于 96%和 70%。菌株 S3 和 S15 的主要脂肪酸包括 C16:0、C16:1 ω7c/C16:1 ω6c、C17:0 Cyclo 和 C18:1 ω6c/C18:1 ω7c。菌株 S15 的基因组 DNA G+C 摩尔百分比为 59.49%,菌株 S3 的为 59.04%。这些结果支持了两个新物种的描述,即 Nevei 沙雷氏菌和 Bockelmannii 沙雷氏菌,菌株 S15(=LMG 31536=DSM 110085)和 S3(=LMG 31535=DSM 110152)分别为其模式株。尽管以前曾描述过粘质沙雷氏菌亚种 sakuensis 形成孢子,但本研究未能确定孢子的存在。由于孢子形成是该亚种的唯一区别特征,因此粘质沙雷氏菌亚种 sakuensis 是粘质沙雷氏菌的后来的异型同义词。

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