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从肯尼亚番茄中分离出的新菌株的全基因组序列,通过Illumina测序获得。

Complete Genome Sequence of a New Strain Isolated from Tomato in Kenya, Obtained from Illumina Sequencing.

作者信息

Avedi E K, Kilalo C D, Olubayo F M, Macharia I, Adediji A O, Ateka E M, Machuka E M, Mutuku J M

机构信息

Department of Phytosanitary Services and Biosafety, Kenya Plant Health Inspectorate Service, Nairobi, Kenya

Department of Plant Science and Crop Protection, University of Nairobi, Nairobi, Kenya.

出版信息

Microbiol Resour Announc. 2020 Jan 30;9(5):e01344-19. doi: 10.1128/MRA.01344-19.

DOI:10.1128/MRA.01344-19
PMID:32001561
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6992865/
Abstract

High-throughput sequence analysis revealed the complete genome sequence of a novel, hitherto uncharacterized strain of (CpCDV) from tomato plants in Kenya. The sequence shared its highest nucleotide similarity (88.7%) with two CpCDV isolates from Burkina Faso.

摘要

高通量序列分析揭示了来自肯尼亚番茄植株的一种新型、迄今未被鉴定的番茄潜隐病毒(CpCDV)毒株的完整基因组序列。该序列与来自布基纳法索的两个CpCDV分离株具有最高的核苷酸相似性(88.7%)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d44c/6992865/886709414e62/MRA.01344-19-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d44c/6992865/886709414e62/MRA.01344-19-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d44c/6992865/886709414e62/MRA.01344-19-f0001.jpg

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Fast and sensitive taxonomic classification for metagenomics with Kaiju.使用Kaiju对宏基因组学进行快速且灵敏的分类学分类。
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