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为鉴定秘鲁实蝇属物种(双翅目:实蝇科)而建立 DNA 条形码文库的进展。

Towards the implementation of a DNA barcode library for the identification of Peruvian species of Anastrepha (Diptera: Tephritidae).

机构信息

Laboratorio de Biología Molecular, Servicio Nacional de Sanidad Agrícola, La Molina, Lima, Perú.

Unidad de Investigación en Entomología y Medio Ambiente, Universidad San Ignacio de Loyola, La Molina, Lima, Perú.

出版信息

PLoS One. 2020 Jan 31;15(1):e0228136. doi: 10.1371/journal.pone.0228136. eCollection 2020.

Abstract

The genus Anastrepha is a diverse lineage of fruit-damaging tephritid flies widespread across the Neotropical Region. Accurate taxonomic identification of these flies is therefore of paramount importance in agricultural contexts. DNA barcoding libraries are molecular-based tools based on a short sequence of the mitochondrial COI gene enabling rapid taxonomic identification of biological species. In this study, we evaluate the utility of this method for species identification of Peruvian species of Anastrepha and assemble a preliminary barcode profile for the group. We obtained 73 individual sequences representing the 15 most common species, 13 of which were either assigned to previously recognized or newly established BINs. Intraspecific genetic divergence between sampled species averaged 1.01% (range 0-3.3%), whereas maximum interspecific values averaged 8.67 (range 8.26-17.12%). DNA barcoding was found to be an effective method to discriminate between many Peruvian species of Anastrepha that were tested, except for most species of the fraterculus species group, which were all assigned to the same BIN as they shared similar and, in some cases, identical barcodes. We complemented this newly produced dataset with 86 published sequences to build a DNA barcoding library of 159 sequences representing 56 Peruvian species of Anastrepha (approx. 58% of species reported from that country). We conclude that DNA barcoding is an effective method to distinguish among Peruvian species of Anastrepha outside the fraterculus group, and that complementary methods (e.g., morphometrics, additional genetic markers) would be desirable to assist sensu stricto species identification for phytosanitary surveillance and management practices of this important group of pestiferous flies.

摘要

该属 Anastrepha 是一个多样化的果实破坏性果蝇谱系,广泛分布于新热带地区。因此,在农业环境中,对这些果蝇进行准确的分类鉴定至关重要。DNA 条形码库是一种基于线粒体 COI 基因短序列的分子工具,能够快速鉴定生物物种。在这项研究中,我们评估了该方法对秘鲁 Anastrepha 物种鉴定的有效性,并为该组组装了一个初步的条形码概况。我们获得了代表 15 个最常见物种的 73 个个体序列,其中 13 个被分配到先前公认的或新建立的 BIN 中。采样物种之间的种内遗传分歧平均为 1.01%(范围 0-3.3%),而最大种间值平均为 8.67%(范围 8.26-17.12%)。DNA 条形码被发现是一种有效的方法,可以区分许多经过测试的秘鲁 Anastrepha 物种,除了 fraterculus 物种组的大多数物种,它们都被分配到同一个 BIN 中,因为它们具有相似的条形码,在某些情况下,甚至是相同的条形码。我们用 86 个已发表的序列补充了这个新产生的数据集,构建了一个由 159 个序列组成的 DNA 条形码库,代表了 56 个秘鲁 Anastrepha 物种(约占该国报告的物种的 58%)。我们得出结论,DNA 条形码是区分 fraterculus 组以外的秘鲁 Anastrepha 物种的有效方法,互补方法(例如,形态计量学,额外的遗传标记)将有助于严格意义上的物种鉴定,以进行植物检疫监测和管理这一重要的害虫蝇类。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b33c/6994132/686f4021a18d/pone.0228136.g001.jpg

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