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一种芫菁的基因组草图

Draft Genome of a Blister Beetle .

作者信息

Guan De-Long, Hao Xiao-Qian, Mi Da, Peng Jiong, Li Yuan, Xie Juan-Ying, Huang Huateng, Xu Sheng-Quan

机构信息

College of Life Sciences, Shaanxi Normal University, Xi'an, China.

NextOmics Biosciences Institute, Wuhan, China.

出版信息

Front Genet. 2020 Jan 8;10:1281. doi: 10.3389/fgene.2019.01281. eCollection 2019.

Abstract

is a widely distributed blister beetle of the Meloidae family. It has the ability to synthesize a potent defensive secretion that includes cantharidin, a toxic compound used to treat many major illnesses. However, owing to the lack of genetic studies on cantharidin biosynthesis in , the commercial use of this species is less extensive than that of other blister beetle species in China. This study reports a draft assembly and possible genes and pathways related to cantharidin biosynthesis for the blister beetle using nanopore sequencing data. The draft genome assembly size was 288.5 Mb with a 467.8 Kb N50, and a repeat content of 50.62%. An integrated gene finding pipeline performed for assembly obtained 16,500 protein coding genes. Benchmarking universal single-copy orthologs assessment showed that this gene set included 94.4% complete Insecta universal single-copy orthologs. Over 99% of these genes were assigned functional annotations in the gene ontology, Kyoto Encyclopedia of Genes and Genomes, or Genbank non-redundant databases. Comparative genomic analysis showed that the completeness and continuity of our assembly was better than those of and blister beetle genomes. The analysis of homologous orthologous genes and inference from evolutionary history imply that the and genera are genetically close, have a similar genetic background, and have differentiated within one million years. This genome assembly provides a valuable resource for future blister beetle studies and will contribute to cantharidin biosynthesis.

摘要

是一种广泛分布的芫菁科甲虫。它能够合成一种强效防御分泌物,其中包括斑蝥素,一种用于治疗多种重大疾病的有毒化合物。然而,由于缺乏对斑蝥素生物合成的基因研究,该物种在中国的商业用途不如其他芫菁科物种广泛。本研究利用纳米孔测序数据报告了该芫菁科甲虫的基因组草图组装以及与斑蝥素生物合成相关的可能基因和途径。基因组草图组装大小为288.5 Mb,N50为467.8 Kb,重复序列含量为50.62%。对组装结果执行的综合基因预测流程获得了16,500个蛋白质编码基因。通用单拷贝直系同源基因评估表明,该基因集包含94.4%完整的昆虫纲通用单拷贝直系同源基因。这些基因中有超过99%在基因本体论、京都基因与基因组百科全书或Genbank非冗余数据库中被赋予了功能注释。比较基因组分析表明,我们组装的完整性和连续性优于其他芫菁科甲虫基因组。同源直系同源基因分析和进化历史推断表明,该属与其他属在遗传上接近,具有相似的遗传背景,且在100万年之内发生了分化。该基因组组装为未来芫菁科甲虫研究提供了宝贵资源,并将有助于斑蝥素的生物合成。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4efe/6972506/61f098dc7e4e/fgene-10-01281-g001.jpg

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