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伪天然产物的原理与设计。

Principle and design of pseudo-natural products.

机构信息

Department of Chemical Biology, Max-Planck Institute for Molecular Physiology, Dortmund, Germany.

School of Chemistry, University of Leeds, Leeds, UK.

出版信息

Nat Chem. 2020 Mar;12(3):227-235. doi: 10.1038/s41557-019-0411-x. Epub 2020 Feb 3.

Abstract

Natural products (NPs) are a significant source of inspiration towards the discovery of new bioactive compounds based on novel molecular scaffolds. However, there are currently only a small number of guiding synthetic strategies available to generate novel NP-inspired scaffolds, limiting both the number and types of compounds accessible. In this Perspective, we discuss a design approach for the preparation of biologically relevant small-molecule libraries, harnessing the unprecedented combination of NP-derived fragments as an overarching strategy for the synthesis of new bioactive compounds. These novel 'pseudo-natural product' classes retain the biological relevance of NPs, yet exhibit structures and bioactivities not accessible to nature or through the use of existing design strategies. We also analyse selected pseudo-NP libraries using chemoinformatic tools, to assess their molecular shape diversity and properties. To facilitate the exploration of biologically relevant chemical space, we identify design principles and connectivity patterns that would provide access to unprecedented pseudo-NP classes, offering new opportunities for bioactive small-molecule discovery.

摘要

天然产物(NPs)是发现新的基于新型分子骨架的生物活性化合物的重要灵感来源。然而,目前只有少数指导合成策略可用于生成新型 NP 启发的支架,这限制了可获得的化合物的数量和种类。在本观点中,我们讨论了一种用于制备具有生物学相关性的小分子文库的设计方法,利用前所未有的 NP 衍生片段组合作为合成新生物活性化合物的总体策略。这些新型“伪天然产物”类保留了 NPs 的生物学相关性,但表现出自然界或使用现有设计策略无法获得的结构和生物活性。我们还使用化学信息学工具分析了选定的伪 NP 文库,以评估它们的分子形状多样性和特性。为了促进对具有生物学相关性的化学空间的探索,我们确定了设计原则和连接模式,这些原则和模式将提供对前所未有的伪 NP 类的访问,为生物活性小分子的发现提供新的机会。

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