Genome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing, China.
Nat Genet. 2020 Feb;52(2):177-186. doi: 10.1038/s41588-019-0569-6. Epub 2020 Feb 3.
Lung cancer is the world's leading cause of cancer death and shows strong ancestry disparities. By sequencing and assembling a large genomic and transcriptomic dataset of lung adenocarcinoma (LUAD) in individuals of East Asian ancestry (EAS; n = 305), we found that East Asian LUADs had more stable genomes characterized by fewer mutations and fewer copy number alterations than LUADs from individuals of European ancestry. This difference is much stronger in smokers as compared to nonsmokers. Transcriptomic clustering identified a new EAS-specific LUAD subgroup with a less complex genomic profile and upregulated immune-related genes, allowing the possibility of immunotherapy-based approaches. Integrative analysis across clinical and molecular features showed the importance of molecular phenotypes in patient prognostic stratification. EAS LUADs had better prediction accuracy than those of European ancestry, potentially due to their less complex genomic architecture. This study elucidated a comprehensive genomic landscape of EAS LUADs and highlighted important ancestry differences between the two cohorts.
肺癌是全球癌症死亡的主要原因,并且表现出强烈的遗传差异。通过对东亚裔(EAS;n=305)个体的肺腺癌(LUAD)进行大规模基因组和转录组数据集的测序和组装,我们发现东亚 LUAD 具有更稳定的基因组,其突变和拷贝数改变较少,与欧洲裔 LUAD 相比。这种差异在吸烟者中比不吸烟者更为明显。转录组聚类鉴定出一个新的 EAS 特异性 LUAD 亚组,其基因组特征更简单,免疫相关基因上调,为免疫治疗方法提供了可能。对临床和分子特征的综合分析表明,分子表型在患者预后分层中的重要性。EAS LUAD 比欧洲裔的预测准确性更好,这可能是由于其基因组结构不太复杂。本研究阐明了 EAS LUAD 的全面基因组景观,并强调了两个队列之间的重要遗传差异。