Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies, Heidelberg 69118, Germany.
Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe 76131, Germany.
Bioinformatics. 2020 May 1;36(10):3263-3265. doi: 10.1093/bioinformatics/btaa070.
We present genesis, a library for working with phylogenetic data, and gappa, an accompanying command-line tool for conducting typical analyses on such data. The tools target phylogenetic trees and phylogenetic placements, sequences, taxonomies and other relevant data types, offer high-level simplicity as well as low-level customizability, and are computationally efficient, well-tested and field-proven.
Both genesis and gappa are written in modern C++11, and are freely available under GPLv3 at http://github.com/lczech/genesis and http://github.com/lczech/gappa.
Supplementary data are available at Bioinformatics online.
我们介绍了 genesis 库，它用于处理系统发育数据，以及配套的 gappa 命令行工具，用于对这类数据进行典型分析。这些工具以系统发育树和系统发育位置、序列、分类群和其他相关数据类型为目标，提供了高级别的简洁性和低级别的可定制性，并且计算效率高、经过充分测试并在实际中得到验证。
genesis 和 gappa 都是用现代的 C++11 编写的，可以在 GPLv3 下免费获得，网址是 http://github.com/lczech/genesis 和 http://github.com/lczech/gappa。
补充数据可在Bioinformatics 在线获取。
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