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DEEPrior: a deep learning tool for the prioritization of gene fusions.
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Identifying the oncogenic potential of gene fusions exploiting miRNAs.
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PlasGUN: gene prediction in plasmid metagenomic short reads using deep learning.
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A Deep Learning Approach to the Screening of Oncogenic Gene Fusions in Humans.
Int J Mol Sci. 2019 Apr 2;20(7):1645. doi: 10.3390/ijms20071645.
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INTEGRATE-neo: a pipeline for personalized gene fusion neoantigen discovery.
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YAMDA: thousandfold speedup of EM-based motif discovery using deep learning libraries and GPU.
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PconsC4: fast, accurate and hassle-free contact predictions.
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BreakID: genomics breakpoints identification to detect gene fusion events using discordant pairs and split reads.
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DLBI: deep learning guided Bayesian inference for structure reconstruction of super-resolution fluorescence microscopy.
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Oncogenic gene fusions in cancer: from biology to therapy.
Signal Transduct Target Ther. 2025 Apr 14;10(1):111. doi: 10.1038/s41392-025-02161-7.
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Seven quick tips for gene-focused computational pangenomic analysis.
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Detection of novel PPP1R1B::STARD3 fusion transcript in acute myeloid leukemia: a case report.
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Exploring the Relationship between Fusion Genes and MicroRNAs in Cancer.
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本文引用的文献

1
A Deep Learning Approach to the Screening of Oncogenic Gene Fusions in Humans.
Int J Mol Sci. 2019 Apr 2;20(7):1645. doi: 10.3390/ijms20071645.
2
Driver Fusions and Their Implications in the Development and Treatment of Human Cancers.
Cell Rep. 2018 Apr 3;23(1):227-238.e3. doi: 10.1016/j.celrep.2018.03.050.
3
ChimerDB 3.0: an enhanced database for fusion genes from cancer transcriptome and literature data mining.
Nucleic Acids Res. 2017 Jan 4;45(D1):D784-D789. doi: 10.1093/nar/gkw1083. Epub 2016 Nov 28.
4
Recurrent chimeric fusion RNAs in non-cancer tissues and cells.
Nucleic Acids Res. 2016 Apr 7;44(6):2859-72. doi: 10.1093/nar/gkw032. Epub 2016 Feb 2.
5
The emerging complexity of gene fusions in cancer.
Nat Rev Cancer. 2015 Jun;15(6):371-81. doi: 10.1038/nrc3947.
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Oncofuse: a computational framework for the prediction of the oncogenic potential of gene fusions.
Bioinformatics. 2013 Oct 15;29(20):2539-46. doi: 10.1093/bioinformatics/btt445. Epub 2013 Aug 16.
8
Poly-gene fusion transcripts and chromothripsis in prostate cancer.
Genes Chromosomes Cancer. 2012 Dec;51(12):1144-53. doi: 10.1002/gcc.21999. Epub 2012 Aug 25.
9
ChimeraScan: a tool for identifying chimeric transcription in sequencing data.
Bioinformatics. 2011 Oct 15;27(20):2903-4. doi: 10.1093/bioinformatics/btr467. Epub 2011 Aug 11.
10
deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data.
PLoS Comput Biol. 2011 May;7(5):e1001138. doi: 10.1371/journal.pcbi.1001138. Epub 2011 May 19.

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