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自由对数似然作为相干衍射成像的无偏度量。

Free log-likelihood as an unbiased metric for coherent diffraction imaging.

机构信息

ESRF, The European Synchrotron, 71 Avenue des Martyrs, 38000, Grenoble, France.

Univ. Grenoble Alpes, Grenoble, France.

出版信息

Sci Rep. 2020 Feb 14;10(1):2664. doi: 10.1038/s41598-020-57561-2.

DOI:10.1038/s41598-020-57561-2
PMID:32060293
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7021796/
Abstract

Coherent Diffraction Imaging (CDI), a technique where an object is reconstructed from a single (2D or 3D) diffraction pattern, recovers the lost diffraction phases without a priori knowledge of the extent (support) of the object. The uncertainty of the object support can lead to over-fitting and prevents an unambiguous metric evaluation of solutions. We propose to use a 'free' log-likelihood indicator, where a small percentage of points are masked from the reconstruction algorithms, as an unbiased metric to evaluate the validity of computed solutions, independent of the sample studied. We also show how a set of solutions can be analysed through an eigen-decomposition to yield a better estimate of the real object. Example analysis on experimental data is presented both for a test pattern dataset, and the diffraction pattern from a live cyanobacteria cell. The method allows the validation of reconstructions on a wide range of materials (hard condensed or biological), and should be particularly relevant for 4th generation synchrotrons and X-ray free electron lasers, where large, high-throughput datasets require a method for unsupervised data evaluation.

摘要

相干衍射成像(CDI)是一种从单个(2D 或 3D)衍射图样重建物体的技术,无需对象的范围(支撑)的先验知识即可恢复丢失的衍射相位。对象支撑的不确定性会导致过度拟合,并阻止对解决方案进行明确的度量评估。我们建议使用“自由”对数似然指标,其中一小部分点从重建算法中被屏蔽,作为一种无偏度量来评估计算解决方案的有效性,而与研究的样本无关。我们还展示了如何通过特征分解分析一组解决方案,以更好地估计真实对象。我们在实验数据上进行了示例分析,包括测试模式数据集和活蓝藻细胞的衍射图案。该方法允许在广泛的材料(硬凝聚或生物)上验证重建,并且对于第四代同步加速器和 X 射线自由电子激光器尤其相关,其中大型、高吞吐量数据集需要一种用于无监督数据评估的方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e7ed/7021796/5319a9084300/41598_2020_57561_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e7ed/7021796/dac7162fb373/41598_2020_57561_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e7ed/7021796/83fa69ac8e18/41598_2020_57561_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e7ed/7021796/4af84949b3ed/41598_2020_57561_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e7ed/7021796/5319a9084300/41598_2020_57561_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e7ed/7021796/dac7162fb373/41598_2020_57561_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e7ed/7021796/83fa69ac8e18/41598_2020_57561_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e7ed/7021796/4af84949b3ed/41598_2020_57561_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e7ed/7021796/5319a9084300/41598_2020_57561_Fig4_HTML.jpg

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