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一项遗传分析揭示了应激后转录重编程所需的新型组蛋白残基。

A genetic analysis reveals novel histone residues required for transcriptional reprogramming upon stress.

机构信息

Cell Signaling Research Group, Departament de Ciències Experimentals i de la Salut, Universitat Pompeu Fabra (UPF), E-08003 Barcelona, Spain.

European Molecular Biology Laboratory, Genome Biology Unit, 69117 Heidelberg, Germany.

出版信息

Nucleic Acids Res. 2020 Apr 17;48(7):3455-3475. doi: 10.1093/nar/gkaa081.

DOI:10.1093/nar/gkaa081
PMID:32064518
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7144942/
Abstract

Cells have the ability to sense, respond and adapt to environmental fluctuations. Stress causes a massive reorganization of the transcriptional program. Many examples of histone post-translational modifications (PTMs) have been associated with transcriptional activation or repression under steady-state growth conditions. Comparatively less is known about the role of histone PTMs in the cellular adaptive response to stress. Here, we performed high-throughput genetic screenings that provide a novel global map of the histone residues required for transcriptional reprogramming in response to heat and osmotic stress. Of note, we observed that the histone residues needed depend on the type of gene and/or stress, thereby suggesting a 'personalized', rather than general, subset of histone requirements for each chromatin context. In addition, we identified a number of new residues that unexpectedly serve to regulate transcription. As a proof of concept, we characterized the function of the histone residues H4-S47 and H4-T30 in response to osmotic and heat stress, respectively. Our results uncover novel roles for the kinases Cla4 and Ste20, yeast homologs of the mammalian PAK2 family, and the Ste11 MAPK as regulators of H4-S47 and H4-T30, respectively. This study provides new insights into the role of histone residues in transcriptional regulation under stress conditions.

摘要

细胞具有感知、响应和适应环境波动的能力。应激会导致转录程序的大规模重组。在稳定生长条件下,许多组蛋白翻译后修饰(PTMs)的例子与转录激活或抑制有关。相比之下,人们对组蛋白 PTMs 在细胞对应激的适应性反应中的作用知之甚少。在这里,我们进行了高通量的遗传筛选,为热和渗透压应激响应中的转录重编程所需的组蛋白残基提供了一个新的全局图谱。值得注意的是,我们观察到所需的组蛋白残基取决于基因的类型和/或应激类型,从而表明每个染色质环境对组蛋白的需求都有一个“个性化”的、而不是通用的子集。此外,我们还鉴定了许多新的残基,它们出人意料地用于调节转录。作为概念验证,我们分别研究了组蛋白残基 H4-S47 和 H4-T30 在渗透压和热应激响应中的功能。我们的结果揭示了激酶 Cla4 和 Ste20、哺乳动物 PAK2 家族的酵母同源物以及 Ste11 MAPK 在调节 H4-S47 和 H4-T30 方面的新作用。这项研究为应激条件下组蛋白残基在转录调控中的作用提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/359f/7144942/40c2ac776d61/gkaa081fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/359f/7144942/b5971eae5d1e/gkaa081fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/359f/7144942/02e4ac01b677/gkaa081fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/359f/7144942/bfdad7f9cd78/gkaa081fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/359f/7144942/a6184d344683/gkaa081fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/359f/7144942/54bc3460bfeb/gkaa081fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/359f/7144942/13f95f6a412c/gkaa081fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/359f/7144942/40c2ac776d61/gkaa081fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/359f/7144942/b5971eae5d1e/gkaa081fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/359f/7144942/02e4ac01b677/gkaa081fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/359f/7144942/bfdad7f9cd78/gkaa081fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/359f/7144942/a6184d344683/gkaa081fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/359f/7144942/54bc3460bfeb/gkaa081fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/359f/7144942/13f95f6a412c/gkaa081fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/359f/7144942/40c2ac776d61/gkaa081fig7.jpg

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