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核桃糖转运蛋白基因家族的全基因组分析和系统发育分析及其对 pv 感染的无应答性。

Genome-Wide Profiling and Phylogenetic Analysis of the Sugar Transporter Gene Family in Walnut and Their Lack of Responsiveness to pv. Infection.

机构信息

Department of Plant Sciences, University of California, Davis, CA 95616, USA.

College of Life Sciences, China West Normal University, Nanchong 637000, China.

出版信息

Int J Mol Sci. 2020 Feb 13;21(4):1251. doi: 10.3390/ijms21041251.

DOI:10.3390/ijms21041251
PMID:32070009
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7072939/
Abstract

Following photosynthesis, sucrose is translocated to sink organs, where it provides the primary source of carbon and energy to sustain plant growth and development. Sugar transporters from the SWEET (sugar will eventually be exported transporter) family are rate-limiting factors that mediate sucrose transport across concentration gradients, sustain yields, and participate in reproductive development, plant senescence, stress responses, as well as support plant-pathogen interaction, the focus of this study. We identified 25 genes in the walnut genome and distinguished each by its individual gene structure and pattern of expression in different walnut tissues. Their chromosomal locations, -acting motifs within their 5' regulatory elements, and phylogenetic relationship patterns provided the first comprehensive analysis of the gene family of sugar transporters in walnut. This family is divided into four clades, the analysis of which suggests duplication and expansion of the SWEET gene family in . In addition, tissue-specific gene expression signatures suggest diverse possible functions for genes. Although these are commonly used by pathogens to harness sugar products from their plant hosts, little was known about their role during pv. () infection. We monitored the expression profiles of the genes in different tissues of "Chandler" walnuts when challenged with pathogen 417 and concluded that SWEET-mediated sugar translocation from the host is not a trigger for walnut blight disease development. This may be directly related to the absence of type III secretion system-dependent transcription activator-like effectors (TALEs) in 417, which suggests different strategies are employed by this pathogen to promote susceptibility to this major aboveground disease of walnuts.

摘要

光合作用后,蔗糖被转运到库器官,在那里它为植物生长和发育提供了主要的碳源和能量。来自 SWEET(糖最终会被输出转运蛋白)家族的糖转运蛋白是介导蔗糖跨浓度梯度运输的限速因子,它们维持产量,并参与生殖发育、植物衰老、应激反应以及支持植物-病原体相互作用,这是本研究的重点。我们在核桃基因组中鉴定了 25 个基因,并通过每个基因的个体基因结构和在不同核桃组织中的表达模式来区分它们。它们的染色体位置、5'调控元件中的顺式作用基序以及系统发育关系模式,为核桃中糖转运蛋白基因家族的首次全面分析提供了依据。该家族分为四个分支,对其的分析表明,在 中 SWEET 基因家族发生了复制和扩张。此外,组织特异性基因表达特征表明 基因可能具有多种功能。尽管这些基因通常被病原体用来从植物宿主中获取糖产物,但人们对它们在 pv. ()感染期间的作用知之甚少。我们监测了“钱德勒”核桃不同组织中 基因在受到病原体 417 挑战时的表达谱,得出结论认为,SWEET 介导的从宿主到糖的转运并不是核桃疫病发展的触发因素。这可能与 417 中缺乏 III 型分泌系统依赖的转录激活因子样效应物(TALEs)直接相关,这表明该病原体采用了不同的策略来促进对这种主要地上核桃病害的易感性。

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