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MolProbity: More and better reference data for improved all-atom structure validation.MolProbity:用于改进全原子结构验证的更多更好的参考数据。
Protein Sci. 2018 Jan;27(1):293-315. doi: 10.1002/pro.3330. Epub 2017 Nov 27.
2
Structure, activity and thermostability investigations of OXA-163, OXA-181 and OXA-245 using biochemical analysis, crystal structures and differential scanning calorimetry analysis.使用生化分析、晶体结构和差示扫描量热法分析对OXA - 163、OXA - 181和OXA - 245进行结构、活性和热稳定性研究。
Acta Crystallogr F Struct Biol Commun. 2017 Oct 1;73(Pt 10):579-587. doi: 10.1107/S2053230X17013838. Epub 2017 Oct 2.
3
Beta-lactamase database (BLDB) - structure and function.β-内酰胺酶数据库(BLDB)——结构与功能
J Enzyme Inhib Med Chem. 2017 Dec;32(1):917-919. doi: 10.1080/14756366.2017.1344235.
4
OXA-244-Producing Escherichia coli Isolates, a Challenge for Clinical Microbiology Laboratories.产 OXA-244 的大肠埃希菌分离株,对临床微生物学实验室的挑战。
Antimicrob Agents Chemother. 2017 Aug 24;61(9). doi: 10.1128/AAC.00818-17. Print 2017 Sep.
5
Molecular Mechanism of Avibactam-Mediated β-Lactamase Inhibition.阿维巴坦介导的β-内酰胺酶抑制作用的分子机制
ACS Infect Dis. 2015 Apr 10;1(4):175-84. doi: 10.1021/acsinfecdis.5b00007. Epub 2015 Feb 11.
6
Characterisation of OXA-244, a chromosomally-encoded OXA-48-like β-lactamase from Escherichia coli.对OXA-244的特性描述,一种来自大肠杆菌的染色体编码的OXA-48样β-内酰胺酶。
Int J Antimicrob Agents. 2016 Jan;47(1):102-3. doi: 10.1016/j.ijantimicag.2015.10.015. Epub 2015 Nov 17.
7
Genetic and biochemical characterization of OXA-405, an OXA-48-type extended-spectrum β-lactamase without significant carbapenemase activity.OXA-405的遗传和生化特性,一种无显著碳青霉烯酶活性的OXA-48型超广谱β-内酰胺酶
Antimicrob Agents Chemother. 2015 Jul;59(7):3823-8. doi: 10.1128/AAC.05058-14. Epub 2015 Apr 13.
8
Heterogeneous hydrolytic features for OXA-48-like β-lactamases.OXA-48样β-内酰胺酶的异质水解特性。
J Antimicrob Chemother. 2015 Apr;70(4):1059-63. doi: 10.1093/jac/dku524. Epub 2015 Jan 11.
9
The ABCD's of β-lactamase nomenclature.β-内酰胺酶命名法的 ABCD。
J Infect Chemother. 2013 Aug;19(4):549-59. doi: 10.1007/s10156-013-0640-7. Epub 2013 Jul 5.
10
How good are my data and what is the resolution?我的数据质量如何,分辨率是多少?
Acta Crystallogr D Biol Crystallogr. 2013 Jul;69(Pt 7):1204-14. doi: 10.1107/S0907444913000061. Epub 2013 Jun 13.

精氨酸 214 在 OXA-48 底物特异性中的作用。

Role of Arginine 214 in the Substrate Specificity of OXA-48.

机构信息

EA7361 Structure, Dynamic, Function and Expression of Broad Spectrum β-Lactamases, UMR1184, Faculty of Medicine, LabEx LERMIT, Université Paris-Saclay, Le Kremlin-Bicêtre, France.

Institut de Chimie des Substances Naturelles, CNRS UPR 2301, Labex LERMIT, Université Paris-Saclay, Gif-sur-Yvette, France.

出版信息

Antimicrob Agents Chemother. 2020 Apr 21;64(5). doi: 10.1128/AAC.02329-19.

DOI:10.1128/AAC.02329-19
PMID:32071047
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7179614/
Abstract

Increasing numbers of variants of the carbapenem-hydrolyzing class D β-lactamase OXA-48 are identified in worldwide. Among them, OXA-181 and OXA-232 are of particular interest, as they differ from each other by a single amino acid substitution at position 214 (R in OXA-181 and S in OXA-232) that results in reduced carbapenem-hydrolyzing activity for OXA-232. To investigate the role of amino acid position 214 (AA214), the X-ray structure of OXA-232 was determined and AA214 of OXA-48 and of OXA-232 was replaced by G, L, D, E, S, R, and K using site-directed mutagenesis. These mutants were phenotypically characterized, and three mutants of OXA-232 were purified to study their steady-state kinetic properties. The X-ray structure of OXA-232 along with molecular modeling studies showed that the interaction via a salt bridge between R214 and D159 in OXA-48 is not possible with the G214 or S214 mutation. In contrast, with K214, which is also positively charged, the interaction with D159 is maintained. With the E214 mutant, an alternative binding conformation of imipenem that is not compatible with a nucleophilic attack by S70 was evidenced. Thus, imipenem has a very poor apparent affinity for the E214 mutant because of its nonproductive binding mode. Similarly, we could explain the lack of temocillin hydrolysis by the OXA-232-S214E mutant, which is due to the unfavorable interaction between the negatively charged R1 substituent of temocillin with the E214 residue. Overall, we demonstrate that AA214 in OXA-48-like β-lactamases is critical for the carbapenemase activity.

摘要

越来越多的碳青霉烯水解类 D 型β-内酰胺酶 OXA-48 的变体在全球范围内被发现。其中,OXA-181 和 OXA-232 尤为引人注目,因为它们在位置 214 处只有一个氨基酸取代(OXA-181 中的 R 和 OXA-232 中的 S),导致 OXA-232 的碳青霉烯水解活性降低。为了研究氨基酸位置 214(AA214)的作用,确定了 OXA-232 的 X 射线结构,并通过定点突变将 OXA-48 和 OXA-232 的 AA214 替换为 G、L、D、E、S、R 和 K。这些突变体进行了表型特征分析,并对 OXA-232 的三个突变体进行了纯化,以研究它们的稳态动力学特性。OXA-232 的 X 射线结构和分子建模研究表明,OXA-48 中 R214 和 D159 之间通过盐桥相互作用与 G214 或 S214 突变是不可能的。相比之下,带正电荷的 K214 与 D159 的相互作用得以维持。对于 E214 突变体,证据表明存在一种与 S70 的亲核攻击不兼容的亚胺培南结合构象。因此,由于其非生产性结合模式,亚胺培南对 E214 突变体的表观亲和力非常差。同样,我们可以解释 OXA-232-S214E 突变体缺乏对替莫西林的水解,这是由于替莫西林的负电荷 R1 取代基与 E214 残基之间的不利相互作用所致。总的来说,我们证明了 OXA-48 样β-内酰胺酶中的 AA214 对碳青霉烯酶活性至关重要。