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磷酸化对组蛋白 H1.0 的无规则 C 末端结构域衍生肽结构行为的影响。

Effect of Phosphorylation on the Structural Behaviour of Peptides Derived from the Intrinsically Disordered C-Terminal Domain of Histone H1.0.

机构信息

Departamento de Química-Física Biológica, Instituto de Química Física Rocasolano (IQFR-CSIC), Serrano 119, 28006, Madrid, Spain.

出版信息

Chemistry. 2020 May 12;26(27):5970-5981. doi: 10.1002/chem.201905496. Epub 2020 Apr 21.

DOI:10.1002/chem.201905496
PMID:32073728
Abstract

To investigate the structural impact of phosphorylation on the human histone H1.0 C-terminal domain, we performed NMR structural studies of model peptides containing a single phosphorylation site: T -H1.0 (T PKK motif) and T -H1.0 (T PVK motif). Both model peptides are mainly disordered in aqueous solution in their non-phosphorylated and phosphorylated forms, but become structured in the presence of trifluoroethanol. The peptides T -H1.0 and pT -H1.0 contain two helical regions, a long amphipathic α helix spanning residues 104-115 and a short α/3 helix (residues 119-123), that are almost perpendicular in T -H1.0 but have a poorly defined orientation in pT -H1.0. Peptides T -H1.0 and pT -H1.0 form very similar α helices between residues 141-147. The TPKK and TPVK motifs show the same backbone conformation, but differ in their side-chain contacts; the Thr and pThr side chains interact with the i+2 Lys side chain in the TPKK motif, and with the i+3 Lys side chain in the TPVK motif. The pT phosphate group in pT -H1.0 and pT -H1.0 has pK values below the intrinsic values, which can be explained by non-specific charge-charge interactions with nearby Lys. The non-polar Val in the TPVK motif accounts for the pT pK being closer to the intrinsic pK value than the pT pK . Altogether, these results validate that minimalist strategies using model peptides can provide structural details difficult to obtain in short-lived intrinsically disordered proteins and domains.

摘要

为了研究磷酸化对人组蛋白 H1.0 C 端结构域的影响,我们对含有单一磷酸化位点的模型肽进行了 NMR 结构研究:T-H1.0(T PKK 基序)和 T-H1.0(T PVK 基序)。这两种模型肽在非磷酸化和磷酸化形式下在水溶液中主要是无序的,但在三氟乙醇存在下变得有结构。肽 T-H1.0 和 pT-H1.0 包含两个螺旋区,一个长的两亲性α螺旋跨越残基 104-115,一个短的α/3 螺旋(残基 119-123),在 T-H1.0 中几乎垂直,但在 pT-H1.0 中方向定义不明确。肽 T-H1.0 和 pT-H1.0 在残基 141-147 之间形成非常相似的α螺旋。TPKK 和 TPVK 基序具有相同的骨架构象,但侧链接触不同;Thr 和 pThr 侧链与 TPKK 基序中的 i+2 Lys 侧链相互作用,与 TPVK 基序中的 i+3 Lys 侧链相互作用。pT-H1.0 和 pT-H1.0 中的 pT 磷酸基团的 pK 值低于固有值,这可以用与附近 Lys 的非特异性电荷-电荷相互作用来解释。TPVK 基序中的非极性 Val 使得 pT pK 更接近固有 pK 值,而不是 pT pK 。总之,这些结果证实了使用模型肽的极简策略可以提供在短寿命的天然无序蛋白质和结构域中难以获得的结构细节。

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