Department of Genetics, Agricultural Biotechnology Institute, National Agricultural Research and Innovation Centre, Gödöllő, H-2100, Hungary.
Sci Rep. 2020 Feb 19;10(1):2969. doi: 10.1038/s41598-020-59938-9.
Based on phylogenetic analyses, strain M2a isolated from honey, an unexpected source of acinetobacters, was classified as Acinetobacter lwoffii. The genome of this strain is strikingly crowded with mobile genetic elements. It harbours more than 250 IS elements of 15 IS-families, several unit and compound transposons and 15 different plasmids. These IS elements, including 30 newly identified ones, could be classified into at least 53 IS species. Regarding the plasmids, 13 of the 15 belong to the Rep-3 superfamily and only one plasmid, belonging to the "Low-GC" family, possesses a seemingly complete conjugative system. The other plasmids, with one exception, have a mobilization region of common pattern, consisting of the divergent mobA/mobL-family and mobS-, mobC- or traD-like genes separated by an oriT-like sequence. Although two plasmids of M2a are almost identical to those of A. lwoffi strains isolated from gold mine or Pleistocene sediments, most of them have no close relatives. The presence of numerous plasmid-borne and chromosomal metal resistance determinants suggests that M2a previously has also evolved in a metal-polluted environment. The numerous, possibly transferable, plasmids and the outstanding number of transposable elements may reflect the high potential of M2a for rapid evolution.
基于系统发育分析,从蜂蜜中分离到的一株 M2a 型菌株被归类为洛菲不动杆菌。该菌株的基因组中挤满了大量的可移动遗传元件。它拥有超过 250 个属于 15 个 IS 家族的 IS 元件、几个单位和复合转座子以及 15 个不同的质粒。这些 IS 元件,包括 30 个新鉴定的元件,可分为至少 53 个 IS 种。关于质粒,15 个中的 13 个属于 Rep-3 超家族,只有一个质粒属于“低 GC”家族,拥有一个看似完整的可转移系统。除了一个例外,其他质粒都有一个常见模式的移动区域,由不同的 mobA/mobL 家族和 mobS、mobC 或 traD 样基因组成,中间被一个 oriT 样序列隔开。尽管 M2a 的两个质粒与从金矿或更新世沉积物中分离到的 A. lwoffi 菌株非常相似,但大多数质粒没有密切的亲缘关系。大量质粒和染色体上的金属抗性决定因子的存在表明,M2a 之前也在金属污染的环境中进化。大量可能可转移的质粒和众多的转座元件可能反映了 M2a 快速进化的潜力。