Jiangsu Key Laboratory of Hazardous Chemicals Safety and Control, College of Safety Science and Engineering, Nanjing Tech University, Nanjing, 210009, China.
Jiangsu Key Laboratory of Hazardous Chemicals Safety and Control, College of Safety Science and Engineering, Nanjing Tech University, Nanjing, 210009, China.
Chemosphere. 2020 Jun;249:126175. doi: 10.1016/j.chemosphere.2020.126175. Epub 2020 Feb 10.
The vast majority of nanomaterials have attracted an upsurge of interest since their discovery and considerable researches are being carried out about their adverse outcomes for human health and the environment. In this study, two regression-based quantitative structure-activity relationship models for nanoparticles (nano-QSAR) were established to predict the cellular uptakes of 109 functionalized magneto-fluorescent nanoparticles to pancreatic cancer cells (PaCa2) and human umbilical vein endothelial cells (HUVEC) lines, respectively. The improved SMILES-based optimal descriptors encoded with certain easily available physicochemical properties were proposed to describe the molecular structure characteristics of the involved nanoparticles, and the Monte Carlo method was used for calculating the improved SMILES-based optimal descriptors. Both developed nano-QSAR models for cellular uptake prediction provided satisfactory statistical results, with the squared correlation coefficient (R) being 0.852 and 0.905 for training sets, and 0.822 and 0.885 for test sets, respectively. Both models were rigorously validated and further extensively compared to literature models. Predominant physicochemical features responsible for cellular uptake were identified by model interpretation. The proposed models could be reasonably expected to provide guidance for synthesizing or choosing safer, more suitable surface modifiers of desired properties prior to their biomedical applications.
自发现以来,绝大多数纳米材料引起了人们的浓厚兴趣,并且正在对它们对人类健康和环境的不良影响进行大量研究。在这项研究中,建立了两个基于回归的纳米颗粒定量构效关系模型(nano-QSAR),分别用于预测 109 种功能化磁荧光纳米颗粒对胰腺癌细胞(PaCa2)和人脐静脉内皮细胞(HUVEC)系的细胞摄取。提出了改进的基于 SMILES 的最优描述符,这些描述符编码了某些易于获得的物理化学性质,用于描述所涉及的纳米颗粒的分子结构特征,并使用蒙特卡罗方法计算了改进的基于 SMILES 的最优描述符。用于细胞摄取预测的两个开发的 nano-QSAR 模型均提供了令人满意的统计结果,其训练集的平方相关系数(R)分别为 0.852 和 0.905,测试集的 R 分别为 0.822 和 0.885。两个模型都经过了严格的验证,并与文献模型进行了广泛的比较。通过模型解释确定了负责细胞摄取的主要物理化学特征。可以合理地期望所提出的模型能够在将其用于生物医学应用之前,为合成或选择具有所需性质的更安全、更合适的表面改性剂提供指导。