Department of Chemistry, Faculty of Pharmaceutical Chemistry, Tehran Medical Sciences, Islamic Azad University, Tehran, Iran.
Laboratory of Environmental Chemistry and Toxicology, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, Milano, Italy.
Nanotoxicology. 2020 Oct;14(8):1118-1126. doi: 10.1080/17435390.2020.1808252. Epub 2020 Sep 2.
Metal oxide nanoparticles (MO-NPs) have unique structural characteristics, exceptionally high surface area, strong mechanical stability, catalytic activities, and are biocompatible. Consequently, MO-NPs have recently attracted considerable interest in the field of imaging-guided therapeutic and biosensing applications. This study aims to develop Quantitative Structure-Activity Relationships (QSAR) for the prediction of cell viability of MO-NPs. The QSAR model based on the so-called optimal descriptors which calculated with a simplified molecular input-line entry system (SMILES). The Monte Carlo technique applied to calculate correlation weights for SMILES fragments. Factually, the optimal descriptor for SMILES is the summation of the correlation weights. The model of cytotoxicity is one variable correlation between cytotoxicity and the above optimal descriptor. The Correlation Intensity Index (CII) is a possible criterion of the predictive potential of the model. Applying the CII as a component of the target function in the Monte Carlo optimization routine, employed by the CORAL program, that is designed to find a predictive relationship between the optimal descriptor and cytotoxicity of MO-NPs, improves the statistical quality of the model. The significance of different eclectic features, in terms of whether they increase/decrease cell viability, i.e. decrease or increase cytotoxicity, is also discussed. Numerical data on 83 experimental samples of MO-NPs activity under different conditions taken from the literature are applied for the "nano-QSAR" analysis.
金属氧化物纳米粒子(MO-NPs)具有独特的结构特性、极高的比表面积、强大的机械稳定性、催化活性和生物相容性。因此,MO-NPs 在成像引导治疗和生物传感应用领域引起了广泛关注。本研究旨在开发用于预测 MO-NPs 细胞活力的定量构效关系(QSAR)。QSAR 模型基于所谓的最优描述符,这些描述符是使用简化分子输入线(entry system, SMILES)计算得出的。蒙特卡罗技术用于计算 SMILES 片段的相关权重。实际上,SMILES 的最优描述符是相关权重的总和。细胞毒性模型是细胞毒性与上述最优描述符之间的单变量相关性。相关强度指数(Correlation Intensity Index, CII)是模型预测潜力的一个可能标准。将 CII 作为 CORAL 程序中目标函数的组成部分,该程序旨在寻找 MO-NPs 的最优描述符与细胞毒性之间的预测关系,这提高了模型的统计质量。还讨论了不同电化学特征的重要性,即它们是增加还是减少细胞活力,也就是降低还是增加细胞毒性。从文献中获取了 83 个不同条件下 MO-NPs 活性的实验样本的数值数据,用于“纳米 QSAR”分析。