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基于 iTRAQ 的 TH0426 生物膜与浮游态比较蛋白质组学分析

An iTRAQ-Based Comparative Proteomics Analysis of the Biofilm and Planktonic States of TH0426.

机构信息

Key Laboratory of Animal Production and Product Quality Safety of Ministry of Education, College of Animal Science and Technology, Jilin Provincial Engineering Research Center of Animal Probiotics, Jilin Agricultural University, Changchun 130118, China.

College of Life Science, Changchun Sci-Tech University, Changchun 130118, China.

出版信息

Int J Mol Sci. 2020 Feb 20;21(4):1450. doi: 10.3390/ijms21041450.

Abstract

is a virulent fish pathogen that causes extensive economic losses in the aquaculture industry worldwide. In this study, a virulent strain of TH0426 was used to establish an in vitro biofilm model. The results show that the biofilm-forming abilities of TH0426 were similar in different media, peaking under conditions of 20 °C and pH 6. Further, isobaric tags for relative and absolute quantitation (iTRAQ)-based quantitative proteomics methods were used to compare the differential expression of between the biofilm and planktonic cells. The results show alterations in 277 proteins, with 130 being upregulated and 147 downregulated. Pathway analysis and GO (Gene Ontology) annotations indicated that these proteins are mainly involved in metabolic pathways and the biosynthesis of secondary metabolites and antibiotics. These proteins are the main factors affecting the adaptability of to its external environment. MRM (multiple reaction 27 monitoring) and qPCR (qPCR) were used to verify the differential proteins of the selected . This is the first report on the biofilm and planktonic cells of , thus contributing to studying the infection and pathogenesis of

摘要

是一种烈性鱼类病原体,在全球水产养殖业造成了广泛的经济损失。在本研究中,使用了一种烈性 TH0426 菌株来建立体外生物膜模型。结果表明,TH0426 在不同培养基中的生物膜形成能力相似,在 20°C 和 pH6 的条件下达到峰值。此外,基于等压标签相对和绝对定量 (iTRAQ) 的定量蛋白质组学方法被用于比较生物膜和浮游细胞之间的差异表达。结果显示,有 277 种蛋白质发生了变化,其中 130 种被上调,147 种被下调。途径分析和 GO(基因本体论)注释表明,这些蛋白质主要参与代谢途径和次生代谢物和抗生素的生物合成。这些蛋白质是影响 适应其外部环境的主要因素。MRM(多重反应监测)和 qPCR(qPCR)被用于验证所选的差异蛋白质。这是关于 的生物膜和浮游细胞的首次报道,从而有助于研究 的感染和发病机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/331f/7073075/c269f6f388c6/ijms-21-01450-g001.jpg

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