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嗜热菌蛋白酶中跨越非阿累尼乌斯断点的构象采样和动力学变化

Conformational sampling and kinetics changes across a non-Arrhenius break point in the enzyme thermolysin.

作者信息

Dong Ming, Lauro Mackenzie L, Koblish Timothy J, Bahnson Brian J

机构信息

Department of Chemistry, North Carolina A&T State University, Greensboro, North Carolina 27411, USA.

Department of Chemistry & Biochemistry, University of Delaware, Newark, Delaware 19716, USA.

出版信息

Struct Dyn. 2020 Feb 14;7(1):014101. doi: 10.1063/1.5130582. eCollection 2020 Jan.

Abstract

Numerous studies have suggested a significant role that protein dynamics play in optimizing enzyme catalysis, and changes in conformational sampling offer a window to explore this role. Thermolysin from , which is a heat-stable zinc metalloproteinase, serves here as a model system to study changes of protein function and conformational sampling across a temperature range of 16-36 °C. The temperature dependence of kinetics of thermolysin showed a biphasic transition at 26 °C that points to potential conformational and dynamic differences across this temperature. The non-Arrhenius behavior observed resembled results from previous studies of a thermophilic alcohol dehydrogenase enzyme, which also indicated a biphasic transition at ambient temperatures. To explore the non-Arrhenius behavior of thermolysin, room temperature crystallography was applied to characterize structural changes in a temperature range across the biphasic transition temperature. The alternate conformation of side chain fitting to electron density of a group of residues showed a higher variability in the temperature range from 26 to 29 °C, which indicated a change in conformational sampling that correlated with the non-Arrhenius break point.

摘要

众多研究表明,蛋白质动力学在优化酶催化过程中发挥着重要作用,而构象采样的变化为探索这一作用提供了一个窗口。来自嗜热栖热菌(Thermus thermophilus)的嗜热菌蛋白酶是一种热稳定的锌金属蛋白酶,在此作为一个模型系统,用于研究在16 - 36°C温度范围内蛋白质功能和构象采样的变化。嗜热菌蛋白酶动力学的温度依赖性在26°C时显示出双相转变,这表明在该温度下可能存在构象和动力学差异。观察到的非阿累尼乌斯行为与先前对嗜热醇脱氢酶的研究结果相似,该研究也表明在环境温度下存在双相转变。为了探究嗜热菌蛋白酶的非阿累尼乌斯行为,采用室温晶体学来表征在双相转变温度范围内的结构变化。一组残基的侧链与电子密度拟合的交替构象在26至29°C的温度范围内显示出更高的变异性,这表明构象采样的变化与非阿累尼乌斯断点相关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/06a3/7021514/8c392917048e/SDTYAE-000007-014101_1-g001.jpg

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