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了解印度尼西亚竹豆地方品种之间的遗传关系,并调查其起源。

Understanding the genetic relationships between Indonesian bambara groundnut landraces and investigating their origins.

机构信息

University of Muhammadiyah Gresik, Jl. Sumatera No. 101 GKB Gresik 61121, Jawa Timur, Indonesia.

Crops For the Future, Jalan Broga, 43500 Semenyih, Selangor, Malaysia.

出版信息

Genome. 2020 Jun;63(6):319-327. doi: 10.1139/gen-2019-0137. Epub 2020 Feb 25.

Abstract

A total of 170 bambara groundnut () accessions were evaluated using both simple sequence repeat (SSR) and single nucleotide polymorphism (SNP) markers generated using genotyping-by-sequencing (GbS), of which 56 accessions were collected from West and East Java. Principal coordinate analysis (PCoA), population structure, and cluster analysis suggest that the East Java accessions could be a result of the introduction of selected West Java accessions. In addition, the current Indonesian accessions were likely introduced from Southern Africa, which would have produced a very marked founding effect such that these accessions present only a fraction of the genetic variability that exists within this species.

摘要

共使用简单重复序列 (SSR) 和基于测序的基因分型 (GBS) 生成的单核苷酸多态性 (SNP) 标记评估了 170 份竹豆 () 种质资源,其中 56 份来自爪哇西部和东部。主坐标分析 (PCoA)、种群结构和聚类分析表明,爪哇东部的种质可能是从爪哇西部选择引入的。此外,目前印度尼西亚的种质资源可能是从南部非洲引进的,这会产生非常明显的奠基效应,以至于这些种质资源只代表了该物种内存在的遗传变异的一小部分。

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