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基于 CRISPRi 的碳流动态调控高效生产 N-乙酰葡萄糖胺及其代谢组学效应

CRISPRi-Based Dynamic Control of Carbon Flow for Efficient -Acetyl Glucosamine Production and Its Metabolomic Effects in .

机构信息

College of Biotechnology, Tianjin University of Science and Technology, Tianjin 300457, China.

National and Local United Engineering Lab of Metabolic Control Fermentation Technology, Tianjin University of Science and Technology, Tianjin 300457, China.

出版信息

J Agric Food Chem. 2020 Mar 11;68(10):3203-3213. doi: 10.1021/acs.jafc.9b07896. Epub 2020 Feb 26.

Abstract

Carbon competition between cell growth and product synthesis is the bottleneck in efficient -acetyl glucosamine (GlcNAc) production in microbial cell factories. In this study, a xylose-induced T7 RNA polymerase-P promoter system was introduced in W3110 to control the GlcNAc synthesis. Meanwhile, an arabinose-induced CRISPR interference (CRISPRi) system was applied to adjust cell growth by attenuating the transcription of key growth-related genes. By designing proper sgRNAs, followed by elaborate adjustment of the addition time and concentration of the two inducers, the carbon flux between cell growth and GlcNAc synthesis was precisely redistributed. Comparative metabolomics analysis results confirmed that the repression of and significantly attenuated the TCA cycle and the synthesis of related amino acids, saving more carbon for the GlcNAc synthesis. Finally, the simultaneous repression of and in strain GLA-14 increased the GlcNAc titer by 47.6% compared with that in without the CRISPRi system in a shake flask. GLA-14 could produce 90.9 g/L GlcNAc within 40 h in a 5 L bioreactor, with a high productivity of 2.27 g/L/h. This dynamic strategy for rebalancing cell growth and product synthesis could be applied in the fermentative production of other chemicals derived from precursors synthesized via central carbon metabolism.

摘要

在微生物细胞工厂中,细胞生长和产物合成之间的碳竞争是高效生产 -N-乙酰氨基葡萄糖(GlcNAc)的瓶颈。在本研究中,在 W3110 中引入了木糖诱导的 T7 RNA 聚合酶-P 启动子系统来控制 GlcNAc 的合成。同时,应用阿拉伯糖诱导的 CRISPR 干扰(CRISPRi)系统通过减弱关键生长相关基因的转录来调节细胞生长。通过设计合适的 sgRNA,并精心调整两种诱导剂的添加时间和浓度,可以精确地重新分配细胞生长和 GlcNAc 合成之间的碳通量。比较代谢组学分析结果证实,和的抑制显著减弱了 TCA 循环和相关氨基酸的合成,为 GlcNAc 合成节省了更多的碳。最终,在摇瓶中,与没有 CRISPRi 系统的 相比,同时抑制菌株 GLA-14 中的 和 可使 GlcNAc 产量提高 47.6%。GLA-14 可在 5 L 生物反应器中在 40 h 内生产 90.9 g/L GlcNAc,生产率高达 2.27 g/L/h。这种用于重新平衡细胞生长和产物合成的动态策略可应用于通过中心碳代谢途径合成前体的其他化学品的发酵生产。

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