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留尼汪岛的多样性,留尼汪岛是印度洋上的一个法国海外岛屿。

Diversity in Réunion, an Overseas French Island in Indian Ocean.

作者信息

Le Gal Solène, Hoarau Gautier, Bertolotti Antoine, Negri Steven, Le Nan Nathan, Bouchara Jean-Philippe, Papon Nicolas, Blanchet Denis, Demar Magalie, Nevez Gilles

机构信息

Groupe d'Étude des Interactions Hôte-Pathogène (GEIHP) EA 3142, Université d'Angers-Université de Brest, Angers, France.

Laboratory of Mycology and Parasitology, CHRU de Brest, Brest, France.

出版信息

Front Microbiol. 2020 Feb 7;11:127. doi: 10.3389/fmicb.2020.00127. eCollection 2020.

Abstract

Data on characteristics from the overseas French territories are still scarce whereas numerous data on genotypes are available for metropolitan France. The main objective of the present study was to identify multilocus genotypes in patients living in Réunion and to compare them with those identified using the same method in metropolitan France and in French Guiana. Archival specimens from immunosuppressed patients, 16 living in Réunion (a French island of the Indian ocean), six living in French Guiana (a South-American French territory), and 24 living in Brest (Brittany, metropolitan France) were examined at the large subunit rRNA (mtLSUrRNA) genes, cytochrome (), and superoxide dismutase () genes using PCR assays and direct sequencing. A total of 23 multi-locus genotypes (MLG) were identified combining mtLSUrRNA, , and alleles, i.e., six in Reunionese patients, three in Guianese patients, and 15 in Brest patients. Only one MLG (mtLSU1-1-2) was shared by Reunionese and Guianese patients (one patient from each region) whereas none of the 22 remaining MLG were shared by the 3 patient groups. A total of eight MLG were newly identified, three in Réunion and five in Brest. These results that were obtained through a retrospective investigation of a relatively low number of specimens, provides original and first data on genetic diversity of in Réunion island. The results suggest that organisms from Réunion present specific characteristics compared to other organisms from metropolitan France and French Guiana.

摘要

来自法国海外领地的相关特征数据仍然匮乏,而法国本土有大量关于基因型的数据。本研究的主要目的是确定留尼汪岛患者的多位点基因型,并将其与在法国本土和法属圭亚那使用相同方法鉴定出的基因型进行比较。对来自免疫抑制患者的存档标本进行了检测,其中16例来自留尼汪岛(印度洋上的一个法国岛屿),6例来自法属圭亚那(南美洲的一个法国领地),24例来自布雷斯特(法国本土布列塔尼地区),采用聚合酶链反应(PCR)检测和直接测序技术,对大亚基核糖体RNA(mtLSUrRNA)基因、细胞色素()和超氧化物歧化酶()基因进行分析。结合mtLSUrRNA、和等位基因,共鉴定出23种多位点基因型(MLG),即留尼汪岛患者中有6种,圭亚那患者中有3种,布雷斯特患者中有15种。留尼汪岛和圭亚那患者(各有1例患者)仅共享一种MLG(mtLSU1-1-2),而其余22种MLG在这三组患者中均未共享。总共新鉴定出8种MLG,其中3种在留尼汪岛,5种在布雷斯特。这些结果是通过对数量相对较少的标本进行回顾性研究获得的,提供了关于留尼汪岛遗传多样性的原始且首次数据。结果表明,与来自法国本土和法属圭亚那的其他生物相比,留尼汪岛的生物具有特定特征。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4614/7019000/cd3f50490d58/fmicb-11-00127-g001.jpg

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