• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

来自两种贝加尔湖特有海绵的宏病毒组数据集。

Metavirome datasets from two endemic Baikal sponges .

作者信息

Butina Tatyana V, Khanaev Igor V, Kravtsova Lyubov S, Maikova Olga O, Bukin Yurij S

机构信息

Limnological Institute, Siberian Branch of Russian Academy of Sciences, 3, Ulan-Batorskaya Street, Irkutsk, 664033, Russia.

Irkutsk State University, Faculty of Biology and Soil Studies, 5, Sukhe-Bator Street, Irkutsk, 664011, Russia.

出版信息

Data Brief. 2020 Feb 7;29:105260. doi: 10.1016/j.dib.2020.105260. eCollection 2020 Apr.

DOI:10.1016/j.dib.2020.105260
PMID:32123705
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7038580/
Abstract

Sponges are ecologically important components of marine and freshwater benthic environments; these holobionts contain a variety of microorganisms and viruses. For the metagenomic characterization of potential taxonomic and functional diversity of sponge-associated dsDNA viruses, we surveyed two samples of Baikal endemic sponge (diseased and visually healthy). In total, after quality processing, we have obtained 3 375 063 and 4 063 311 reads; of these 97 557 and 88 517 sequences, accounting for ca. 2.9 and 2.2% of datasets, have been identified as viral. We have revealed approximately 28 viral families, among which the bacteriophages of the , and families, as well as the viruses of the and families, dominated in the samples. Analysis of viral sequences using the COG database has indicated 22 functional categories of proteins. Viral communities of visually healthy and diseased Baikal sponges were significantly different. The metagenome sequence data were deposited to NCBI SRA as BioProject PRJNA577390.

摘要

海绵是海洋和淡水底栖环境中具有重要生态意义的组成部分;这些共生体包含多种微生物和病毒。为了对与海绵相关的双链DNA病毒的潜在分类学和功能多样性进行宏基因组学表征,我们调查了两个贝加尔湖特有海绵样本(患病的和外观健康的)。经过质量处理后,我们总共获得了3375063条和4063311条 reads;其中97557条和88517条序列被鉴定为病毒序列,分别约占数据集的2.9%和2.2%。我们发现了大约28个病毒科,其中 、 和 科的噬菌体以及 和 科的病毒在样本中占主导地位。使用COG数据库对病毒序列进行分析表明存在22种蛋白质功能类别。外观健康和患病的贝加尔湖海绵的病毒群落存在显著差异。宏基因组序列数据已作为生物项目PRJNA577390存入NCBI SRA。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3afe/7038580/40fd43df0ba9/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3afe/7038580/8a84878e9b20/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3afe/7038580/40fd43df0ba9/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3afe/7038580/8a84878e9b20/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3afe/7038580/40fd43df0ba9/gr2.jpg

相似文献

1
Metavirome datasets from two endemic Baikal sponges .来自两种贝加尔湖特有海绵的宏病毒组数据集。
Data Brief. 2020 Feb 7;29:105260. doi: 10.1016/j.dib.2020.105260. eCollection 2020 Apr.
2
Metagenomic Assessment of DNA Viral Diversity in Freshwater Sponges, .淡水海绵中DNA病毒多样性的宏基因组评估
Microorganisms. 2022 Feb 21;10(2):480. doi: 10.3390/microorganisms10020480.
3
Metagenomic Analysis of Virioplankton from the Pelagic Zone of Lake Baikal.贝加尔湖浮游区病毒组的宏基因组分析。
Viruses. 2019 Oct 29;11(11):991. doi: 10.3390/v11110991.
4
Estimate of the diversity of viral and bacterial assemblage in the coastal water of Lake Baikal.贝加尔湖沿海水域病毒和细菌组合的多样性估计。
FEMS Microbiol Lett. 2019 May 1;366(9). doi: 10.1093/femsle/fnz094.
5
[Phototrophic microorganisms in the symbiotic communities of Baikal sponges: Diversity of psbA gene (encoding D1 protein of photosystem II) sequences].[贝加尔湖海绵共生群落中的光合微生物:光系统II的D1蛋白编码基因psbA序列的多样性]
Mol Biol (Mosk). 2017 May-Jun;51(3):423-430. doi: 10.7868/S0026898417030089.
6
Taxonomic, functional and expression analysis of viral communities associated with marine sponges.与海洋海绵相关的病毒群落的分类学、功能和表达分析。
PeerJ. 2021 Feb 2;9:e10715. doi: 10.7717/peerj.10715. eCollection 2021.
7
Dinoflagellates associated with freshwater sponges from the ancient lake baikal.与贝加尔湖古代淡水海绵有关的甲藻。
Protist. 2011 Apr;162(2):222-36. doi: 10.1016/j.protis.2010.07.002.
8
Viral Metagenomic Analysis of the Fecal Samples in Domestic Dogs ().犬粪便样本的病毒宏基因组分析()。
Viruses. 2023 Mar 6;15(3):685. doi: 10.3390/v15030685.
9
Revealing the Viral Community in the Hadal Sediment of the New Britain Trench.揭示新不列颠海沟深渊沉积物中的病毒群落。
Genes (Basel). 2021 Jun 29;12(7):990. doi: 10.3390/genes12070990.
10
[Analysis of bacterial communities of two Lake Baikal endemic sponge species].[贝加尔湖两种特有海绵物种的细菌群落分析]
Mikrobiologiia. 2014 Nov-Dec;83(6):682-93.

引用本文的文献

1
Metagenomic Assessment of DNA Viral Diversity in Freshwater Sponges, .淡水海绵中DNA病毒多样性的宏基因组评估
Microorganisms. 2022 Feb 21;10(2):480. doi: 10.3390/microorganisms10020480.
2
An Interplay between Viruses and Bacteria Associated with the White Sea Sponges Revealed by Metagenomics.宏基因组学揭示白海海绵相关病毒与细菌之间的相互作用
Life (Basel). 2021 Dec 24;12(1):25. doi: 10.3390/life12010025.
3
Virome Analysis of Near-Bottom Coastal Water of Lake Baikal.贝加尔湖近底层沿海水域的病毒群落分析

本文引用的文献

1
Environmental conditions affect activity and associated microorganisms of marine sponges.环境条件会影响海洋海绵的活动和相关微生物。
Mar Environ Res. 2018 Nov;142:59-68. doi: 10.1016/j.marenvres.2018.09.020. Epub 2018 Sep 20.
2
Reef invertebrate viromics: diversity, host specificity and functional capacity.珊瑚无脊椎动物病毒组学:多样性、宿主特异性和功能能力。
Environ Microbiol. 2018 Jun;20(6):2125-2141. doi: 10.1111/1462-2920.14110. Epub 2018 Apr 30.
3
HoloVir: A Workflow for Investigating the Diversity and Function of Viruses in Invertebrate Holobionts.
Microbiol Resour Announc. 2020 Dec 3;9(49):e01241-20. doi: 10.1128/MRA.01241-20.
4
Viral ecogenomics across the Porifera.病毒生态基因组学研究跨越多孔动物门。
Microbiome. 2020 Oct 2;8(1):144. doi: 10.1186/s40168-020-00919-5.
全病毒:一种研究无脊椎动物全生物中病毒多样性和功能的工作流程。
Front Microbiol. 2016 Jun 9;7:822. doi: 10.3389/fmicb.2016.00822. eCollection 2016.
4
The Sponge Hologenome.海绵全基因组
mBio. 2016 Apr 21;7(2):e00135-16. doi: 10.1128/mBio.00135-16.
5
ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data.ShortRead:一个用于输入、质量评估和高通量序列数据探索的生物信息学软件包。
Bioinformatics. 2009 Oct 1;25(19):2607-8. doi: 10.1093/bioinformatics/btp450. Epub 2009 Aug 3.
6
Sponge-associated microorganisms: evolution, ecology, and biotechnological potential.海绵相关微生物:进化、生态及生物技术潜力
Microbiol Mol Biol Rev. 2007 Jun;71(2):295-347. doi: 10.1128/MMBR.00040-06.
7
Pvclust: an R package for assessing the uncertainty in hierarchical clustering.Pvclust:一个用于评估层次聚类不确定性的R语言包。
Bioinformatics. 2006 Jun 15;22(12):1540-2. doi: 10.1093/bioinformatics/btl117. Epub 2006 Apr 4.
8
NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.NCBI参考序列(RefSeq):一个经过整理的基因组、转录本和蛋白质的非冗余序列数据库。
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4. doi: 10.1093/nar/gki025.
9
The COG database: a tool for genome-scale analysis of protein functions and evolution.COG数据库:一种用于蛋白质功能和进化的基因组规模分析的工具。
Nucleic Acids Res. 2000 Jan 1;28(1):33-6. doi: 10.1093/nar/28.1.33.
10
Basic local alignment search tool.基本局部比对搜索工具
J Mol Biol. 1990 Oct 5;215(3):403-10. doi: 10.1016/S0022-2836(05)80360-2.