利用纳米孔和Illumina测序技术获得的偶发分枝杆菌JCM15661全基因组序列
Complete Genome Sequence of Mycobacterium xenopi JCM15661, Obtained Using Nanopore and Illumina Sequencing Technologies.
作者信息
Yoshida Mitsunori, Fukano Hanako, Asakura Takanori, Hisatsune Junzo, Hoshino Yoshihiko
机构信息
Department of Mycobacteriology, Leprosy Research Center, National Institute of Infectious Diseases, Tokyo, Japan.
Antimicrobial Resistance Research Center, National Institute of Infectious Diseases, Tokyo, Japan.
出版信息
Microbiol Resour Announc. 2020 Mar 5;9(10):e01583-19. doi: 10.1128/MRA.01583-19.
Abstract
is a slow-growing mycobacterial organism for which pathogenic features are unclear. Here, we report the complete genome sequence of an type strain. This sequence will provide essential information for future taxonomic and comparative genome studies of these mycobacteria.
摘要
是一种生长缓慢的分枝杆菌属微生物，其致病特征尚不清楚。在此，我们报告了一株 型菌株的完整基因组序列。该序列将为这些分枝杆菌未来的分类学和比较基因组研究提供重要信息。
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3
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